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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| acinar cell of salivary gland | 1206 | 0.95 | 0.94 | 0.97 | 0.96 | 0.00 | 0.92 | 0.96 | 0.96 | 0.97 |\n| B cell | 518 | 0.98 | 1.00 | 0.99 | 1.00 | 0.00 | 1.00 | 1.00 | 0.99 | 1.00 |\n| fibroblast | 472 | 0.97 | 0.94 | 0.96 | 0.97 | 0.00 | 0.96 | 0.95 | 0.95 | 0.98 |\n| CD8-positive, alpha-beta T cell | 386 | 0.90 | 0.88 | 0.93 | 0.90 | 0.00 | 0.86 | 0.89 | 0.90 | 0.93 |\n| duct epithelial cell | 377 | 0.85 | 0.77 | 0.93 | 0.86 | 0.00 | 0.79 | 0.86 | 0.89 | 0.90 |\n| CD4-positive, alpha-beta T cell | 166 | 0.89 | 0.88 | 0.87 | 0.83 | 0.00 | 0.85 | 0.85 | 0.89 | 0.91 |\n| endothelial cell | 159 | 0.93 | 0.89 | 0.93 | 0.90 | 0.00 | 0.91 | 0.95 | 0.96 | 0.95 |\n| macrophage | 173 | 0.86 | 0.71 | 0.93 | 0.89 | 0.00 | 0.91 | 0.95 | 0.94 | 0.96 |\n| basal cell | 107 | 0.89 | 0.93 | 0.95 | 0.89 | 0.00 | 0.91 | 0.86 | 0.89 | 0.91 |\n| tissue-resident macrophage | 82 | 0.82 | 0.00 | 0.94 | 0.88 | 0.00 | 0.81 | 0.88 | 0.89 | 0.94 |\n| plasma cell | 48 | 0.97 | 0.97 | 0.95 | 0.98 | 0.00 | 0.96 | 0.97 | 0.96 | 0.98 |\n| endothelial cell of lymphatic vessel | 58 | 0.88 | 0.69 | 0.87 | 0.73 | 0.00 | 0.80 | 0.89 | 0.93 | 0.91 |\n| adventitial cell | 56 | 0.85 | 0.28 | 0.74 | 0.80 | 0.00 | 0.77 | 0.74 | 0.74 | 0.86 |\n| vascular associated smooth muscle cell | 44 | 0.98 | 0.98 | 0.97 | 0.97 | 0.00 | 0.95 | 0.98 | 0.98 | 0.98 |\n| neutrophil | 24 | 0.91 | 0.96 | 0.96 | 0.92 | 0.00 | 0.98 | 0.98 | 0.94 | 0.98 |\n| myoepithelial cell | 17 | 0.92 | 0.83 | 0.86 | 0.92 | 0.00 | 0.87 | 0.83 | 0.76 | 0.92 |\n| T cell | 19 | 0.56 | 0.10 | 0.55 | 0.56 | 0.00 | 0.45 | 0.52 | 0.48 | 0.62 |\n| ionocyte | 16 | 0.91 | 0.94 | 0.97 | 0.81 | 0.00 | 0.81 | 0.91 | 0.91 | 0.91 |\n| endothelial cell of artery | 10 | 0.75 | 0.67 | 0.53 | 0.42 | 0.00 | 0.80 | 0.76 | 0.78 | 0.76 |\n| monocyte | 11 | 0.44 | 0.64 | 0.59 | 0.43 | 0.00 | 0.53 | 0.56 | 0.71 | 0.62 |\n| natural killer cell | 10 | 0.49 | 0.53 | 0.60 | 0.29 | 0.00 | 0.40 | 0.62 | 0.62 | 0.67 |\n| mast cell | 5 | 0.00 | 0.77 | 0.73 | 0.75 | 0.00 | 0.77 | 0.67 | 0.73 | 0.89 |\n| classical monocyte | 8 | 0.00 | 0.00 | 0.18 | 0.22 | 0.00 | 0.18 | 0.17 | 0.31 | 0.00 |\n| intermediate monocyte | 7 | 0.00 | 0.00 | 0.33 | 0.00 | 0.00 | 0.27 | 0.20 | 0.18 | 0.17 |\n| mature NK T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 |\n| leukocyte | 1 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 |\n| pericyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| salivary gland cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| hematopoietic precursor cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| acinar cell of salivary gland | 11031 | 0.95 | 0.92 | 0.98 | 0.98 | 0.00 | 0.93 | 0.96 | 0.96 | 0.97 |\n| B cell | 4430 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| fibroblast | 3995 | 0.97 | 0.94 | 0.98 | 0.98 | 0.00 | 0.97 | 0.96 | 0.96 | 0.99 |\n| CD8-positive, alpha-beta T cell | 3679 | 0.90 | 0.86 | 0.95 | 0.92 | 0.00 | 0.87 | 0.91 | 0.91 | 0.94 |\n| duct epithelial cell | 3512 | 0.84 | 0.74 | 0.95 | 0.92 | 0.00 | 0.81 | 0.87 | 0.89 | 0.92 |\n| CD4-positive, alpha-beta T cell | 1720 | 0.88 | 0.86 | 0.92 | 0.87 | 0.00 | 0.88 | 0.90 | 0.91 | 0.91 |\n| endothelial cell | 1470 | 0.93 | 0.88 | 0.96 | 0.95 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |\n| macrophage | 1450 | 0.86 | 0.71 | 0.96 | 0.94 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |\n| basal cell | 1075 | 0.92 | 0.92 | 0.96 | 0.93 | 0.00 | 0.94 | 0.94 | 0.94 | 0.96 |\n| tissue-resident macrophage | 572 | 0.75 | 0.00 | 0.93 | 0.92 | 0.00 | 0.82 | 0.90 | 0.89 | 0.93 |\n| plasma cell | 535 | 0.96 | 0.96 | 0.99 | 0.97 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| endothelial cell of lymphatic vessel | 488 | 0.90 | 0.66 | 0.92 | 0.92 | 0.00 | 0.93 | 0.94 | 0.95 | 0.97 |\n| adventitial cell | 404 | 0.84 | 0.21 | 0.87 | 0.85 | 0.00 | 0.82 | 0.78 | 0.81 | 0.93 |\n| vascular associated smooth muscle cell | 359 | 0.96 | 0.96 | 0.97 | 0.97 | 0.00 | 0.96 | 0.97 | 0.97 | 0.97 |\n| neutrophil | 219 | 0.92 | 0.94 | 0.98 | 0.92 | 0.00 | 0.96 | 0.99 | 0.98 | 0.98 |\n| myoepithelial cell | 199 | 0.93 | 0.90 | 0.95 | 0.94 | 0.00 | 0.91 | 0.91 | 0.90 | 0.96 |\n| T cell | 174 | 0.66 | 0.25 | 0.75 | 0.75 | 0.00 | 0.65 | 0.79 | 0.80 | 0.84 |\n| ionocyte | 126 | 0.91 | 0.89 | 0.93 | 0.78 | 0.00 | 0.73 | 0.94 | 0.92 | 0.93 |\n| endothelial cell of artery | 106 | 0.75 | 0.64 | 0.92 | 0.73 | 0.00 | 0.85 | 0.91 | 0.94 | 0.92 |\n| monocyte | 88 | 0.45 | 0.48 | 0.64 | 0.47 | 0.00 | 0.68 | 0.89 | 0.92 | 0.88 |\n| natural killer cell | 63 | 0.38 | 0.38 | 0.61 | 0.49 | 0.00 | 0.34 | 0.59 | 0.54 | 0.66 |\n| mast cell | 40 | 0.00 | 0.72 | 0.73 | 0.75 | 0.00 | 0.89 | 1.00 | 1.00 | 0.95 |\n| classical monocyte | 35 | 0.00 | 0.00 | 0.45 | 0.49 | 0.00 | 0.81 | 1.00 | 0.92 | 0.92 |\n| intermediate monocyte | 35 | 0.00 | 0.00 | 0.60 | 0.48 | 0.00 | 0.69 | 0.89 | 0.90 | 0.93 |\n| mature NK T cell | 20 | 0.00 | 0.00 | 0.10 | 0.00 | 0.00 | 0.56 | 0.98 | 0.82 | 0.62 |\n| leukocyte | 5 | 0.00 | 0.00 | 0.91 | 0.67 | 0.00 | 1.00 | 0.91 | 1.00 | 1.00 |\n| pericyte | 3 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.86 | 1.00 | 0.75 | 0.50 |\n| salivary gland cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.02 | 0.80 | 0.80 | 0.67 |\n| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 0.25 | 1.00 | 1.00 |\n| non-classical monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| hematopoietic precursor cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.25 | 1.00 | 0.67 | 1.00 |"
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celltypist.pkl

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checkpoint

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