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OnClass.npz

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accuracies.json

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 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| mesenchymal stem cell | 2349 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.93 | 0.97 | 0.97 | 0.99 |\n| skeletal muscle satellite stem cell | 595 | 0.96 | 0.97 | 0.97 | 0.97 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |\n| endothelial cell | 358 | 0.95 | 0.95 | 0.93 | 0.94 | 0.00 | 0.95 | 0.95 | 0.95 | 0.96 |\n| capillary endothelial cell | 336 | 0.92 | 0.92 | 0.91 | 0.90 | 0.00 | 0.90 | 0.88 | 0.89 | 0.92 |\n| macrophage | 275 | 0.96 | 0.96 | 0.96 | 0.95 | 0.00 | 0.88 | 0.94 | 0.94 | 0.96 |\n| pericyte | 249 | 0.88 | 0.91 | 0.90 | 0.88 | 0.00 | 0.84 | 0.87 | 0.90 | 0.91 |\n| CD8-positive, alpha-beta T cell | 148 | 0.66 | 0.77 | 0.78 | 0.70 | 0.00 | 0.72 | 0.69 | 0.75 | 0.78 |\n| endothelial cell of vascular tree | 70 | 0.90 | 0.89 | 0.75 | 0.86 | 0.00 | 0.88 | 0.83 | 0.82 | 0.90 |\n| CD4-positive, alpha-beta T cell | 44 | 0.44 | 0.45 | 0.34 | 0.23 | 0.00 | 0.47 | 0.43 | 0.50 | 0.47 |\n| fast muscle cell | 53 | 0.86 | 0.90 | 0.90 | 0.68 | 0.00 | 0.92 | 0.90 | 0.93 | 0.91 |\n| tendon cell | 36 | 0.69 | 0.82 | 0.79 | 0.68 | 0.00 | 0.31 | 0.54 | 0.54 | 0.81 |\n| smooth muscle cell | 20 | 0.27 | 0.48 | 0.22 | 0.25 | 0.00 | 0.37 | 0.54 | 0.57 | 0.54 |\n| endothelial cell of artery | 18 | 0.86 | 0.94 | 0.88 | 0.76 | 0.00 | 0.80 | 0.82 | 0.83 | 0.97 |\n| neutrophil | 24 | 0.76 | 0.82 | 0.82 | 0.58 | 0.00 | 0.71 | 0.78 | 0.80 | 0.80 |\n| slow muscle cell | 17 | 0.76 | 0.80 | 0.74 | 0.36 | 0.00 | 0.78 | 0.80 | 0.82 | 0.80 |\n| endothelial cell of lymphatic vessel | 10 | 0.76 | 0.84 | 0.80 | 0.73 | 0.00 | 0.70 | 0.80 | 0.73 | 0.80 |\n| erythrocyte | 15 | 0.38 | 0.40 | 0.93 | 0.75 | 0.00 | 0.46 | 0.67 | 0.60 | 0.79 |\n| T cell | 15 | 0.00 | 0.12 | 0.24 | 0.00 | 0.00 | 0.14 | 0.36 | 0.41 | 0.24 |\n| mature NK T cell | 7 | 0.31 | 0.00 | 0.18 | 0.00 | 0.00 | 0.24 | 0.31 | 0.29 | 0.36 |\n| granulocyte | 6 | 0.60 | 0.00 | 0.59 | 0.47 | 0.00 | 0.32 | 0.63 | 0.62 | 0.71 |\n| natural killer cell | 5 | 0.50 | 0.40 | 0.33 | 0.00 | 0.00 | 0.43 | 0.50 | 0.73 | 0.36 |\n| mast cell | 4 | 0.42 | 0.62 | 0.57 | 0.50 | 0.00 | 0.57 | 0.57 | 0.62 | 0.50 |\n| epithelial cell | 7 | 0.55 | 0.36 | 0.60 | 0.40 | 0.00 | 0.30 | 0.55 | 0.55 | 0.55 |\n| B cell | 7 | 0.53 | 0.73 | 0.73 | 0.22 | 0.00 | 0.77 | 0.92 | 0.83 | 0.83 |\n| monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.24 | 0.20 | 0.36 | 0.00 |\n| basophil | 3 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.50 | 0.00 | 0.80 | 0.00 |\n| myeloid dendritic cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 0.50 | 0.40 | 0.00 |\n| plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mesenchymal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| mesenchymal stem cell | 21131 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.93 | 0.97 | 0.97 | 0.99 |\n| skeletal muscle satellite stem cell | 5555 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |\n| endothelial cell | 3168 | 0.92 | 0.93 | 0.95 | 0.95 | 0.00 | 0.94 | 0.94 | 0.94 | 0.95 |\n| capillary endothelial cell | 2954 | 0.89 | 0.90 | 0.93 | 0.91 | 0.00 | 0.89 | 0.90 | 0.91 | 0.93 |\n| macrophage | 2454 | 0.96 | 0.96 | 0.97 | 0.96 | 0.00 | 0.89 | 0.96 | 0.96 | 0.97 |\n| pericyte | 2137 | 0.90 | 0.90 | 0.93 | 0.93 | 0.00 | 0.91 | 0.92 | 0.93 | 0.94 |\n| CD8-positive, alpha-beta T cell | 1269 | 0.66 | 0.76 | 0.85 | 0.80 | 0.00 | 0.81 | 0.84 | 0.89 | 0.88 |\n| endothelial cell of vascular tree | 653 | 0.89 | 0.89 | 0.89 | 0.90 | 0.00 | 0.89 | 0.89 | 0.89 | 0.92 |\n| CD4-positive, alpha-beta T cell | 470 | 0.51 | 0.50 | 0.64 | 0.53 | 0.00 | 0.67 | 0.78 | 0.81 | 0.77 |\n| fast muscle cell | 421 | 0.94 | 0.96 | 0.95 | 0.90 | 0.00 | 0.94 | 0.96 | 0.95 | 0.97 |\n| tendon cell | 384 | 0.73 | 0.76 | 0.84 | 0.71 | 0.00 | 0.37 | 0.59 | 0.61 | 0.82 |\n| smooth muscle cell | 198 | 0.46 | 0.46 | 0.54 | 0.66 | 0.00 | 0.68 | 0.79 | 0.81 | 0.88 |\n| endothelial cell of artery | 162 | 0.78 | 0.83 | 0.89 | 0.75 | 0.00 | 0.75 | 0.85 | 0.84 | 0.91 |\n| neutrophil | 150 | 0.77 | 0.81 | 0.88 | 0.78 | 0.00 | 0.80 | 0.94 | 0.96 | 0.96 |\n| slow muscle cell | 157 | 0.92 | 0.93 | 0.92 | 0.77 | 0.00 | 0.90 | 0.98 | 0.99 | 0.95 |\n| endothelial cell of lymphatic vessel | 145 | 0.89 | 0.88 | 0.91 | 0.92 | 0.00 | 0.94 | 0.92 | 0.91 | 0.92 |\n| erythrocyte | 109 | 0.45 | 0.27 | 0.93 | 0.85 | 0.00 | 0.45 | 0.70 | 0.69 | 0.89 |\n| T cell | 93 | 0.00 | 0.06 | 0.34 | 0.24 | 0.00 | 0.65 | 0.90 | 0.86 | 0.88 |\n| mature NK T cell | 91 | 0.49 | 0.06 | 0.49 | 0.29 | 0.00 | 0.42 | 0.82 | 0.87 | 0.84 |\n| granulocyte | 88 | 0.71 | 0.00 | 0.80 | 0.71 | 0.00 | 0.44 | 0.72 | 0.93 | 0.95 |\n| natural killer cell | 86 | 0.62 | 0.41 | 0.49 | 0.31 | 0.00 | 0.79 | 0.86 | 0.84 | 0.86 |\n| mast cell | 62 | 0.70 | 0.70 | 0.81 | 0.85 | 0.00 | 0.93 | 0.95 | 0.94 | 0.87 |\n| epithelial cell | 50 | 0.67 | 0.12 | 0.73 | 0.67 | 0.00 | 0.44 | 0.87 | 0.85 | 0.79 |\n| B cell | 42 | 0.63 | 0.81 | 0.92 | 0.65 | 0.00 | 0.98 | 0.99 | 0.99 | 0.98 |\n| monocyte | 28 | 0.00 | 0.07 | 0.12 | 0.19 | 0.00 | 0.19 | 0.74 | 0.74 | 0.30 |\n| basophil | 8 | 0.00 | 0.00 | 0.17 | 0.55 | 0.00 | 0.76 | 1.00 | 0.94 | 0.86 |\n| myeloid dendritic cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.21 | 1.00 | 0.67 | 0.00 |\n| plasma cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 0.89 | 0.89 | 1.00 |\n| non-classical monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 0.75 | 0.86 | 0.80 |\n| intermediate monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.27 | 1.00 | 1.00 | 0.00 |\n| mesenchymal cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.01 | 0.80 | 0.80 | 0.00 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| mesenchymal stem cell | 2349 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.93 | 0.97 | 0.97 | 0.99 |\n| skeletal muscle satellite stem cell | 595 | 0.96 | 0.97 | 0.97 | 0.97 | 0.00 | 0.97 | 0.97 | 0.97 | 0.97 |\n| endothelial cell | 358 | 0.95 | 0.95 | 0.93 | 0.95 | 0.00 | 0.95 | 0.95 | 0.95 | 0.96 |\n| capillary endothelial cell | 336 | 0.92 | 0.92 | 0.91 | 0.89 | 0.00 | 0.89 | 0.88 | 0.89 | 0.92 |\n| macrophage | 275 | 0.96 | 0.96 | 0.96 | 0.97 | 0.00 | 0.88 | 0.94 | 0.94 | 0.96 |\n| pericyte | 249 | 0.88 | 0.91 | 0.90 | 0.86 | 0.00 | 0.83 | 0.88 | 0.90 | 0.91 |\n| CD8-positive, alpha-beta T cell | 148 | 0.66 | 0.77 | 0.78 | 0.76 | 0.00 | 0.71 | 0.70 | 0.75 | 0.79 |\n| endothelial cell of vascular tree | 70 | 0.90 | 0.89 | 0.74 | 0.82 | 0.00 | 0.86 | 0.83 | 0.82 | 0.89 |\n| CD4-positive, alpha-beta T cell | 44 | 0.44 | 0.45 | 0.36 | 0.31 | 0.00 | 0.52 | 0.43 | 0.50 | 0.50 |\n| fast muscle cell | 53 | 0.86 | 0.90 | 0.90 | 0.80 | 0.00 | 0.87 | 0.86 | 0.93 | 0.90 |\n| tendon cell | 36 | 0.69 | 0.82 | 0.79 | 0.33 | 0.00 | 0.28 | 0.54 | 0.54 | 0.80 |\n| smooth muscle cell | 20 | 0.27 | 0.48 | 0.34 | 0.19 | 0.00 | 0.36 | 0.56 | 0.57 | 0.61 |\n| endothelial cell of artery | 18 | 0.86 | 0.94 | 0.88 | 0.89 | 0.00 | 0.74 | 0.82 | 0.83 | 0.97 |\n| neutrophil | 24 | 0.76 | 0.82 | 0.82 | 0.71 | 0.00 | 0.75 | 0.78 | 0.80 | 0.79 |\n| slow muscle cell | 17 | 0.76 | 0.80 | 0.78 | 0.55 | 0.00 | 0.64 | 0.78 | 0.82 | 0.78 |\n| endothelial cell of lymphatic vessel | 10 | 0.76 | 0.84 | 0.80 | 0.67 | 0.00 | 0.67 | 0.80 | 0.73 | 0.80 |\n| erythrocyte | 15 | 0.38 | 0.40 | 0.93 | 0.74 | 0.00 | 0.84 | 0.59 | 0.60 | 0.81 |\n| T cell | 15 | 0.00 | 0.12 | 0.24 | 0.00 | 0.00 | 0.23 | 0.36 | 0.41 | 0.12 |\n| mature NK T cell | 7 | 0.31 | 0.00 | 0.18 | 0.00 | 0.00 | 0.25 | 0.29 | 0.29 | 0.36 |\n| granulocyte | 6 | 0.60 | 0.00 | 0.56 | 0.36 | 0.00 | 0.20 | 0.60 | 0.62 | 0.67 |\n| natural killer cell | 5 | 0.50 | 0.40 | 0.33 | 0.57 | 0.00 | 0.62 | 0.50 | 0.73 | 0.50 |\n| mast cell | 4 | 0.42 | 0.62 | 0.62 | 0.57 | 0.00 | 0.57 | 0.53 | 0.62 | 0.53 |\n| epithelial cell | 7 | 0.55 | 0.36 | 0.44 | 0.73 | 0.00 | 0.33 | 0.55 | 0.55 | 0.55 |\n| B cell | 7 | 0.53 | 0.73 | 0.73 | 0.62 | 0.00 | 0.44 | 0.92 | 0.83 | 0.73 |\n| monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.40 | 0.00 | 0.19 | 0.18 | 0.36 | 0.00 |\n| basophil | 3 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 1.00 | 0.00 | 0.80 | 0.50 |\n| myeloid dendritic cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.40 | 0.00 |\n| plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mesenchymal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| mesenchymal stem cell | 21131 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.94 | 0.97 | 0.97 | 0.99 |\n| skeletal muscle satellite stem cell | 5555 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |\n| endothelial cell | 3168 | 0.92 | 0.93 | 0.95 | 0.95 | 0.00 | 0.94 | 0.94 | 0.94 | 0.95 |\n| capillary endothelial cell | 2954 | 0.89 | 0.90 | 0.93 | 0.92 | 0.00 | 0.90 | 0.90 | 0.91 | 0.92 |\n| macrophage | 2454 | 0.96 | 0.96 | 0.97 | 0.96 | 0.00 | 0.89 | 0.96 | 0.96 | 0.97 |\n| pericyte | 2137 | 0.90 | 0.90 | 0.93 | 0.93 | 0.00 | 0.89 | 0.92 | 0.93 | 0.94 |\n| CD8-positive, alpha-beta T cell | 1269 | 0.66 | 0.76 | 0.85 | 0.81 | 0.00 | 0.79 | 0.84 | 0.89 | 0.89 |\n| endothelial cell of vascular tree | 653 | 0.89 | 0.89 | 0.89 | 0.90 | 0.00 | 0.91 | 0.88 | 0.89 | 0.92 |\n| CD4-positive, alpha-beta T cell | 470 | 0.51 | 0.50 | 0.63 | 0.53 | 0.00 | 0.63 | 0.78 | 0.81 | 0.78 |\n| fast muscle cell | 421 | 0.94 | 0.96 | 0.95 | 0.92 | 0.00 | 0.94 | 0.93 | 0.95 | 0.96 |\n| tendon cell | 384 | 0.73 | 0.76 | 0.84 | 0.50 | 0.00 | 0.34 | 0.59 | 0.61 | 0.81 |\n| smooth muscle cell | 198 | 0.46 | 0.46 | 0.54 | 0.68 | 0.00 | 0.62 | 0.80 | 0.81 | 0.88 |\n| endothelial cell of artery | 162 | 0.78 | 0.83 | 0.90 | 0.80 | 0.00 | 0.76 | 0.84 | 0.84 | 0.90 |\n| neutrophil | 150 | 0.77 | 0.81 | 0.87 | 0.82 | 0.00 | 0.87 | 0.93 | 0.96 | 0.96 |\n| slow muscle cell | 157 | 0.92 | 0.93 | 0.91 | 0.80 | 0.00 | 0.73 | 0.98 | 0.99 | 0.97 |\n| endothelial cell of lymphatic vessel | 145 | 0.89 | 0.88 | 0.92 | 0.84 | 0.00 | 0.78 | 0.93 | 0.91 | 0.93 |\n| erythrocyte | 109 | 0.45 | 0.27 | 0.93 | 0.88 | 0.00 | 0.77 | 0.74 | 0.69 | 0.91 |\n| T cell | 93 | 0.00 | 0.06 | 0.33 | 0.22 | 0.00 | 0.63 | 0.89 | 0.86 | 0.84 |\n| mature NK T cell | 91 | 0.49 | 0.06 | 0.49 | 0.28 | 0.00 | 0.43 | 0.82 | 0.87 | 0.84 |\n| granulocyte | 88 | 0.71 | 0.00 | 0.79 | 0.67 | 0.00 | 0.44 | 0.73 | 0.93 | 0.96 |\n| natural killer cell | 86 | 0.62 | 0.41 | 0.50 | 0.39 | 0.00 | 0.68 | 0.86 | 0.84 | 0.84 |\n| mast cell | 62 | 0.70 | 0.70 | 0.81 | 0.79 | 0.00 | 0.81 | 0.95 | 0.94 | 0.85 |\n| epithelial cell | 50 | 0.67 | 0.12 | 0.73 | 0.73 | 0.00 | 0.45 | 0.87 | 0.85 | 0.79 |\n| B cell | 42 | 0.63 | 0.81 | 0.93 | 0.78 | 0.00 | 0.78 | 0.99 | 0.99 | 0.96 |\n| monocyte | 28 | 0.00 | 0.07 | 0.12 | 0.32 | 0.00 | 0.16 | 0.72 | 0.74 | 0.44 |\n| basophil | 8 | 0.00 | 0.00 | 0.17 | 0.36 | 0.00 | 0.76 | 1.00 | 0.94 | 0.77 |\n| myeloid dendritic cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.56 | 1.00 | 0.67 | 0.00 |\n| plasma cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 1.00 | 0.89 | 1.00 |\n| non-classical monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.29 | 0.86 | 0.86 | 0.50 |\n| intermediate monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 0.00 |\n| mesenchymal cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.01 | 0.80 | 0.80 | 0.00 |"
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celltypist.pkl

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