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OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

@@ -1,4 +1,4 @@
 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| cardiac endothelial cell | 1015 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.98 | 0.99 | 0.99 |\n| regular atrial cardiac myocyte | 590 | 0.82 | 0.66 | 0.83 | 0.78 | 0.00 | 0.74 | 0.93 | 0.95 | 0.90 |\n| ventricular cardiac muscle cell | 259 | 0.52 | 0.34 | 0.67 | 0.50 | 0.00 | 0.48 | 0.87 | 0.90 | 0.74 |\n| pericyte | 202 | 0.93 | 0.73 | 0.93 | 0.85 | 0.00 | 0.93 | 0.95 | 0.95 | 0.94 |\n| fibroblast of cardiac tissue | 194 | 1.00 | 0.96 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| smooth muscle cell | 154 | 0.87 | 0.83 | 0.87 | 0.75 | 0.00 | 0.87 | 0.85 | 0.90 | 0.89 |\n| macrophage | 68 | 0.95 | 0.96 | 0.95 | 0.86 | 0.00 | 0.94 | 0.96 | 0.93 | 0.96 |\n| CD8-positive, alpha-beta T cell | 26 | 0.76 | 0.74 | 0.79 | 0.72 | 0.00 | 0.90 | 0.82 | 0.78 | 0.78 |\n| mesothelial cell | 17 | 0.97 | 0.52 | 0.87 | 0.97 | 0.00 | 0.68 | 0.97 | 0.97 | 0.97 |\n| erythrocyte | 10 | 0.67 | 0.60 | 0.86 | 0.82 | 0.00 | 0.58 | 0.69 | 0.78 | 0.64 |\n| neutrophil | 14 | 1.00 | 1.00 | 1.00 | 0.84 | 0.00 | 0.90 | 0.96 | 0.96 | 1.00 |\n| monocyte | 10 | 0.84 | 0.46 | 0.78 | 0.67 | 0.00 | 0.74 | 0.78 | 0.78 | 0.82 |\n| neuron | 10 | 1.00 | 0.89 | 1.00 | 0.86 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |\n| natural killer cell | 8 | 0.00 | 0.00 | 0.31 | 0.00 | 0.00 | 0.82 | 0.59 | 0.31 | 0.00 |\n| CD4-positive, alpha-beta T cell | 6 | 0.00 | 0.71 | 0.83 | 0.22 | 0.00 | 0.92 | 0.80 | 0.77 | 0.83 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| platelet | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| cardiac endothelial cell | 9077 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.98 | 0.99 | 0.99 |\n| regular atrial cardiac myocyte | 5226 | 0.83 | 0.54 | 0.91 | 0.91 | 0.00 | 0.98 | 0.93 | 0.96 | 0.96 |\n| ventricular cardiac muscle cell | 2340 | 0.56 | 0.39 | 0.80 | 0.77 | 0.00 | 0.97 | 0.87 | 0.92 | 0.91 |\n| pericyte | 1827 | 0.94 | 0.63 | 0.96 | 0.89 | 0.00 | 0.95 | 0.96 | 0.97 | 0.97 |\n| fibroblast of cardiac tissue | 1753 | 0.99 | 0.94 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| smooth muscle cell | 1363 | 0.87 | 0.86 | 0.92 | 0.82 | 0.00 | 0.90 | 0.89 | 0.92 | 0.94 |\n| macrophage | 623 | 0.92 | 0.94 | 0.95 | 0.92 | 0.00 | 0.93 | 0.99 | 0.95 | 0.97 |\n| CD8-positive, alpha-beta T cell | 282 | 0.75 | 0.79 | 0.86 | 0.82 | 0.00 | 0.97 | 1.00 | 1.00 | 0.95 |\n| mesothelial cell | 139 | 0.96 | 0.23 | 0.97 | 0.96 | 0.00 | 0.84 | 1.00 | 0.95 | 0.98 |\n| erythrocyte | 133 | 0.82 | 0.72 | 0.94 | 0.89 | 0.00 | 0.82 | 0.86 | 0.90 | 0.85 |\n| neutrophil | 126 | 0.98 | 0.98 | 0.97 | 0.90 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |\n| monocyte | 114 | 0.71 | 0.45 | 0.82 | 0.80 | 0.00 | 0.85 | 0.98 | 0.91 | 0.96 |\n| neuron | 72 | 0.93 | 0.88 | 0.98 | 0.87 | 0.00 | 0.84 | 0.97 | 0.95 | 0.96 |\n| natural killer cell | 71 | 0.00 | 0.22 | 0.64 | 0.51 | 0.00 | 0.89 | 0.99 | 1.00 | 0.86 |\n| CD4-positive, alpha-beta T cell | 63 | 0.00 | 0.67 | 0.77 | 0.50 | 0.00 | 0.94 | 1.00 | 0.99 | 0.97 |\n| B cell | 16 | 0.00 | 0.81 | 0.85 | 0.45 | 0.00 | 0.91 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.54 | 1.00 | 1.00 | 0.44 |\n| plasmacytoid dendritic cell | 6 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.57 | 1.00 | 1.00 | 1.00 |\n| T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.14 | 1.00 | 1.00 | 0.50 |\n| plasma cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.75 | 1.00 | 1.00 | 1.00 |\n| mast cell | 3 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| platelet | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 1.00 | 1.00 | 1.00 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| cardiac endothelial cell | 1025 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |\n| regular atrial cardiac myocyte | 571 | 0.83 | 0.55 | 0.83 | 0.80 | 0.00 | 0.70 | 0.92 | 0.95 | 0.90 |\n| ventricular cardiac muscle cell | 252 | 0.49 | 0.34 | 0.68 | 0.47 | 0.00 | 0.55 | 0.85 | 0.90 | 0.75 |\n| pericyte | 212 | 0.93 | 0.61 | 0.93 | 0.89 | 0.00 | 0.93 | 0.93 | 0.93 | 0.94 |\n| fibroblast of cardiac tissue | 193 | 0.99 | 0.95 | 0.99 | 0.98 | 0.00 | 0.90 | 0.99 | 0.99 | 0.99 |\n| smooth muscle cell | 152 | 0.86 | 0.85 | 0.87 | 0.80 | 0.00 | 0.79 | 0.85 | 0.84 | 0.88 |\n| macrophage | 71 | 0.95 | 0.96 | 0.95 | 0.79 | 0.00 | 0.96 | 0.96 | 0.97 | 0.97 |\n| CD8-positive, alpha-beta T cell | 27 | 0.74 | 0.72 | 0.77 | 0.57 | 0.00 | 0.83 | 0.81 | 0.76 | 0.78 |\n| mesothelial cell | 19 | 0.97 | 0.48 | 0.97 | 0.97 | 0.00 | 0.67 | 0.95 | 0.95 | 0.97 |\n| erythrocyte | 11 | 0.67 | 0.65 | 0.83 | 0.83 | 0.00 | 0.62 | 0.71 | 0.74 | 0.67 |\n| neutrophil | 16 | 1.00 | 1.00 | 1.00 | 0.88 | 0.00 | 0.94 | 0.97 | 0.97 | 1.00 |\n| monocyte | 9 | 0.89 | 0.20 | 0.71 | 0.70 | 0.00 | 0.75 | 0.82 | 0.84 | 0.88 |\n| neuron | 9 | 1.00 | 0.94 | 1.00 | 0.75 | 0.00 | 0.62 | 1.00 | 1.00 | 1.00 |\n| natural killer cell | 9 | 0.00 | 0.15 | 0.40 | 0.18 | 0.00 | 0.56 | 0.59 | 0.29 | 0.17 |\n| CD4-positive, alpha-beta T cell | 7 | 0.00 | 0.75 | 0.67 | 0.33 | 0.00 | 0.88 | 0.75 | 0.80 | 0.88 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| platelet | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| cardiac endothelial cell | 9067 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |\n| regular atrial cardiac myocyte | 5245 | 0.85 | 0.32 | 0.92 | 0.91 | 0.00 | 0.97 | 0.93 | 0.96 | 0.96 |\n| ventricular cardiac muscle cell | 2347 | 0.55 | 0.38 | 0.81 | 0.79 | 0.00 | 0.95 | 0.87 | 0.92 | 0.91 |\n| pericyte | 1817 | 0.93 | 0.50 | 0.96 | 0.92 | 0.00 | 0.96 | 0.97 | 0.96 | 0.97 |\n| fibroblast of cardiac tissue | 1754 | 0.99 | 0.95 | 0.99 | 0.99 | 0.00 | 0.93 | 0.99 | 0.99 | 0.99 |\n| smooth muscle cell | 1365 | 0.86 | 0.85 | 0.92 | 0.85 | 0.00 | 0.83 | 0.91 | 0.91 | 0.94 |\n| macrophage | 620 | 0.93 | 0.94 | 0.96 | 0.87 | 0.00 | 0.96 | 0.98 | 0.96 | 0.97 |\n| CD8-positive, alpha-beta T cell | 281 | 0.75 | 0.80 | 0.87 | 0.77 | 0.00 | 0.97 | 1.00 | 1.00 | 0.95 |\n| mesothelial cell | 137 | 0.96 | 0.24 | 0.96 | 0.95 | 0.00 | 0.77 | 0.99 | 0.98 | 0.97 |\n| erythrocyte | 132 | 0.77 | 0.71 | 0.94 | 0.89 | 0.00 | 0.78 | 0.86 | 0.87 | 0.85 |\n| neutrophil | 124 | 0.98 | 0.98 | 0.98 | 0.95 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |\n| monocyte | 115 | 0.77 | 0.40 | 0.81 | 0.76 | 0.00 | 0.87 | 1.00 | 0.91 | 0.96 |\n| neuron | 73 | 0.94 | 0.95 | 0.99 | 0.86 | 0.00 | 0.72 | 0.97 | 0.96 | 0.96 |\n| natural killer cell | 70 | 0.00 | 0.35 | 0.67 | 0.46 | 0.00 | 0.90 | 0.99 | 1.00 | 0.87 |\n| CD4-positive, alpha-beta T cell | 62 | 0.00 | 0.70 | 0.81 | 0.56 | 0.00 | 0.93 | 1.00 | 1.00 | 0.97 |\n| B cell | 16 | 0.00 | 0.81 | 0.86 | 0.36 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 7 | 0.00 | 0.00 | 0.25 | 0.00 | 0.00 | 0.92 | 1.00 | 1.00 | 0.25 |\n| plasmacytoid dendritic cell | 6 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.30 | 1.00 | 1.00 | 0.50 |\n| plasma cell | 3 | 0.00 | 0.00 | 0.50 | 0.50 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |\n| mast cell | 3 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |\n| platelet | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |"
 }

celltypist.pkl

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harmony_knn_classifier.joblib

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preprocessing.json

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         "ENSG00000001036",
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