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tabula_sapiens_Heart

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Heart
Model card Files Community
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@@ -32,25 +32,25 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | cardiac endothelial cell | 1007 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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- | regular atrial cardiac myocyte | 602 | 0.84 | 0.65 | 0.84 | 0.77 | 0.00 | 0.84 | 0.91 | 0.95 | 0.89 |
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- | ventricular cardiac muscle cell | 264 | 0.49 | 0.39 | 0.69 | 0.50 | 0.00 | 0.35 | 0.83 | 0.92 | 0.70 |
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- | pericyte | 201 | 0.90 | 0.71 | 0.92 | 0.85 | 0.00 | 0.93 | 0.94 | 0.94 | 0.94 |
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- | fibroblast of cardiac tissue | 180 | 0.99 | 0.95 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |
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- | smooth muscle cell | 158 | 0.83 | 0.85 | 0.86 | 0.74 | 0.00 | 0.87 | 0.85 | 0.89 | 0.90 |
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- | macrophage | 72 | 0.93 | 0.95 | 0.95 | 0.89 | 0.00 | 0.94 | 0.95 | 0.95 | 0.94 |
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- | CD8-positive, alpha-beta T cell | 30 | 0.76 | 0.82 | 0.89 | 0.77 | 0.00 | 0.88 | 0.87 | 0.85 | 0.86 |
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- | mesothelial cell | 14 | 0.96 | 0.44 | 0.96 | 0.96 | 0.00 | 0.72 | 0.96 | 0.96 | 0.96 |
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- | erythrocyte | 9 | 0.70 | 0.57 | 0.70 | 0.80 | 0.00 | 0.70 | 0.76 | 0.67 | 0.67 |
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- | neutrophil | 11 | 0.96 | 0.96 | 0.96 | 0.85 | 0.00 | 0.92 | 0.96 | 0.92 | 0.96 |
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- | monocyte | 12 | 0.73 | 0.38 | 0.78 | 0.73 | 0.00 | 0.67 | 0.80 | 0.61 | 0.76 |
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- | neuron | 9 | 1.00 | 0.71 | 1.00 | 0.63 | 0.00 | 0.82 | 1.00 | 1.00 | 1.00 |
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- | natural killer cell | 9 | 0.56 | 0.18 | 0.67 | 0.31 | 0.00 | 0.74 | 0.53 | 0.53 | 0.46 |
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- | CD4-positive, alpha-beta T cell | 5 | 0.71 | 0.83 | 0.91 | 0.25 | 0.00 | 1.00 | 0.89 | 0.83 | 0.91 |
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  | B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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- | T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.18 | 0.00 | 0.00 | 0.00 |
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  | plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | platelet | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
@@ -59,28 +59,28 @@ The train accuracies are computed on the training data.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | cardiac endothelial cell | 9085 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
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- | regular atrial cardiac myocyte | 5214 | 0.84 | 0.36 | 0.91 | 0.93 | 0.00 | 0.98 | 0.92 | 0.96 | 0.97 |
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- | ventricular cardiac muscle cell | 2335 | 0.52 | 0.36 | 0.81 | 0.82 | 0.00 | 0.97 | 0.85 | 0.93 | 0.93 |
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- | pericyte | 1828 | 0.93 | 0.59 | 0.96 | 0.89 | 0.00 | 0.96 | 0.96 | 0.96 | 0.97 |
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- | fibroblast of cardiac tissue | 1767 | 0.99 | 0.93 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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- | smooth muscle cell | 1359 | 0.85 | 0.85 | 0.92 | 0.81 | 0.00 | 0.90 | 0.90 | 0.92 | 0.94 |
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- | macrophage | 619 | 0.91 | 0.94 | 0.96 | 0.93 | 0.00 | 0.97 | 0.99 | 0.96 | 0.98 |
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- | CD8-positive, alpha-beta T cell | 278 | 0.75 | 0.81 | 0.86 | 0.82 | 0.00 | 0.96 | 1.00 | 1.00 | 0.96 |
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- | mesothelial cell | 142 | 0.96 | 0.30 | 0.96 | 0.96 | 0.00 | 0.84 | 0.99 | 0.98 | 0.98 |
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- | erythrocyte | 134 | 0.85 | 0.71 | 0.94 | 0.90 | 0.00 | 0.81 | 0.88 | 0.88 | 0.87 |
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- | neutrophil | 129 | 0.99 | 0.99 | 0.97 | 0.94 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
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- | monocyte | 112 | 0.69 | 0.45 | 0.82 | 0.80 | 0.00 | 0.76 | 0.98 | 0.89 | 0.97 |
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- | neuron | 73 | 0.93 | 0.90 | 0.99 | 0.89 | 0.00 | 0.79 | 0.97 | 0.95 | 0.96 |
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- | natural killer cell | 70 | 0.47 | 0.26 | 0.69 | 0.51 | 0.00 | 0.89 | 0.99 | 0.99 | 0.89 |
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- | CD4-positive, alpha-beta T cell | 64 | 0.62 | 0.73 | 0.75 | 0.45 | 0.00 | 0.97 | 1.00 | 0.99 | 0.96 |
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- | B cell | 16 | 0.82 | 0.83 | 0.88 | 0.62 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |
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- | mature NK T cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.88 | 1.00 | 1.00 | 0.60 |
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- | plasmacytoid dendritic cell | 6 | 0.00 | 0.00 | 0.80 | 0.50 | 0.00 | 0.63 | 1.00 | 1.00 | 1.00 |
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- | T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 | 1.00 | 1.00 | 1.00 |
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- | plasma cell | 3 | 0.00 | 0.00 | 0.80 | 0.67 | 0.00 | 0.20 | 1.00 | 1.00 | 1.00 |
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- | mast cell | 3 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
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- | platelet | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |
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  </details>
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | cardiac endothelial cell | 1015 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.98 | 0.99 | 0.99 |
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+ | regular atrial cardiac myocyte | 590 | 0.82 | 0.66 | 0.83 | 0.78 | 0.00 | 0.74 | 0.93 | 0.95 | 0.90 |
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+ | ventricular cardiac muscle cell | 259 | 0.52 | 0.34 | 0.67 | 0.50 | 0.00 | 0.48 | 0.87 | 0.90 | 0.74 |
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+ | pericyte | 202 | 0.93 | 0.73 | 0.93 | 0.85 | 0.00 | 0.93 | 0.95 | 0.95 | 0.94 |
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+ | fibroblast of cardiac tissue | 194 | 1.00 | 0.96 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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+ | smooth muscle cell | 154 | 0.87 | 0.83 | 0.87 | 0.75 | 0.00 | 0.87 | 0.85 | 0.90 | 0.89 |
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+ | macrophage | 68 | 0.95 | 0.96 | 0.95 | 0.86 | 0.00 | 0.94 | 0.96 | 0.93 | 0.96 |
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+ | CD8-positive, alpha-beta T cell | 26 | 0.76 | 0.74 | 0.79 | 0.72 | 0.00 | 0.90 | 0.82 | 0.78 | 0.78 |
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+ | mesothelial cell | 17 | 0.97 | 0.52 | 0.87 | 0.97 | 0.00 | 0.68 | 0.97 | 0.97 | 0.97 |
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+ | erythrocyte | 10 | 0.67 | 0.60 | 0.86 | 0.82 | 0.00 | 0.58 | 0.69 | 0.78 | 0.64 |
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+ | neutrophil | 14 | 1.00 | 1.00 | 1.00 | 0.84 | 0.00 | 0.90 | 0.96 | 0.96 | 1.00 |
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+ | monocyte | 10 | 0.84 | 0.46 | 0.78 | 0.67 | 0.00 | 0.74 | 0.78 | 0.78 | 0.82 |
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+ | neuron | 10 | 1.00 | 0.89 | 1.00 | 0.86 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
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+ | natural killer cell | 8 | 0.00 | 0.00 | 0.31 | 0.00 | 0.00 | 0.82 | 0.59 | 0.31 | 0.00 |
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+ | CD4-positive, alpha-beta T cell | 6 | 0.00 | 0.71 | 0.83 | 0.22 | 0.00 | 0.92 | 0.80 | 0.77 | 0.83 |
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  | B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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+ | T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | platelet | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | cardiac endothelial cell | 9077 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.98 | 0.99 | 0.99 |
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+ | regular atrial cardiac myocyte | 5226 | 0.83 | 0.54 | 0.91 | 0.91 | 0.00 | 0.98 | 0.93 | 0.96 | 0.96 |
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+ | ventricular cardiac muscle cell | 2340 | 0.56 | 0.39 | 0.80 | 0.77 | 0.00 | 0.97 | 0.87 | 0.92 | 0.91 |
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+ | pericyte | 1827 | 0.94 | 0.63 | 0.96 | 0.89 | 0.00 | 0.95 | 0.96 | 0.97 | 0.97 |
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+ | fibroblast of cardiac tissue | 1753 | 0.99 | 0.94 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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+ | smooth muscle cell | 1363 | 0.87 | 0.86 | 0.92 | 0.82 | 0.00 | 0.90 | 0.89 | 0.92 | 0.94 |
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+ | macrophage | 623 | 0.92 | 0.94 | 0.95 | 0.92 | 0.00 | 0.93 | 0.99 | 0.95 | 0.97 |
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+ | CD8-positive, alpha-beta T cell | 282 | 0.75 | 0.79 | 0.86 | 0.82 | 0.00 | 0.97 | 1.00 | 1.00 | 0.95 |
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+ | mesothelial cell | 139 | 0.96 | 0.23 | 0.97 | 0.96 | 0.00 | 0.84 | 1.00 | 0.95 | 0.98 |
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+ | erythrocyte | 133 | 0.82 | 0.72 | 0.94 | 0.89 | 0.00 | 0.82 | 0.86 | 0.90 | 0.85 |
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+ | neutrophil | 126 | 0.98 | 0.98 | 0.97 | 0.90 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |
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+ | monocyte | 114 | 0.71 | 0.45 | 0.82 | 0.80 | 0.00 | 0.85 | 0.98 | 0.91 | 0.96 |
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+ | neuron | 72 | 0.93 | 0.88 | 0.98 | 0.87 | 0.00 | 0.84 | 0.97 | 0.95 | 0.96 |
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+ | natural killer cell | 71 | 0.00 | 0.22 | 0.64 | 0.51 | 0.00 | 0.89 | 0.99 | 1.00 | 0.86 |
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+ | CD4-positive, alpha-beta T cell | 63 | 0.00 | 0.67 | 0.77 | 0.50 | 0.00 | 0.94 | 1.00 | 0.99 | 0.97 |
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+ | B cell | 16 | 0.00 | 0.81 | 0.85 | 0.45 | 0.00 | 0.91 | 1.00 | 1.00 | 1.00 |
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+ | mature NK T cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.54 | 1.00 | 1.00 | 0.44 |
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+ | plasmacytoid dendritic cell | 6 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.57 | 1.00 | 1.00 | 1.00 |
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+ | T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.14 | 1.00 | 1.00 | 0.50 |
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+ | plasma cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.75 | 1.00 | 1.00 | 1.00 |
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+ | mast cell | 3 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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+ | platelet | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.33 | 1.00 | 1.00 | 1.00 |
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  </details>
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