Hugging Face's logo

popV
/
tabula_sapiens_Heart

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Heart
Model card Files Community
canergen commited on
Commit
236a6f2
·
verified ·
1 Parent(s): df06ca8

Upload README.md with huggingface_hub

Browse files
Files changed (1) hide show
  1. README.md +40 -39
README.md CHANGED
@@ -5,7 +5,8 @@ tags:
5
  - biology
6
  - genomics
7
  - single-cell
8
- - anndata_version:0.11.1
 
9
  - popV
10
  - 'tissue: Heart'
11
  ---
@@ -31,25 +32,25 @@ computed on a 10% random subset of the data that was not used for training.
31
 
32
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
33
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
34
- | cardiac endothelial cell | 1000 | 0.99 | 0.98 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
35
- | regular atrial cardiac myocyte | 601 | 0.84 | 0.74 | 0.84 | 0.77 | 0.00 | 0.77 | 0.92 | 0.95 | 0.91 |
36
- | ventricular cardiac muscle cell | 262 | 0.50 | 0.31 | 0.67 | 0.57 | 0.00 | 0.46 | 0.84 | 0.88 | 0.75 |
37
- | pericyte | 201 | 0.91 | 0.74 | 0.93 | 0.89 | 0.00 | 0.93 | 0.95 | 0.95 | 0.94 |
38
- | fibroblast of cardiac tissue | 186 | 0.99 | 0.97 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
39
- | smooth muscle cell | 155 | 0.84 | 0.85 | 0.88 | 0.77 | 0.00 | 0.86 | 0.89 | 0.92 | 0.90 |
40
- | macrophage | 74 | 0.95 | 0.95 | 0.96 | 0.93 | 0.00 | 0.96 | 0.94 | 0.95 | 0.95 |
41
- | CD8-positive, alpha-beta T cell | 32 | 0.78 | 0.79 | 0.91 | 0.78 | 0.00 | 0.88 | 0.88 | 0.86 | 0.85 |
42
- | mesothelial cell | 13 | 0.96 | 0.56 | 0.92 | 0.89 | 0.00 | 0.80 | 0.96 | 0.96 | 0.96 |
43
- | erythrocyte | 12 | 0.67 | 0.65 | 0.88 | 0.88 | 0.00 | 0.69 | 0.69 | 0.71 | 0.67 |
44
- | neutrophil | 12 | 0.96 | 0.96 | 0.96 | 0.92 | 0.00 | 0.92 | 0.96 | 0.85 | 0.96 |
45
- | monocyte | 12 | 0.74 | 0.29 | 0.67 | 0.64 | 0.00 | 0.56 | 0.76 | 0.70 | 0.76 |
46
- | neuron | 9 | 1.00 | 1.00 | 1.00 | 0.78 | 0.00 | 0.78 | 1.00 | 1.00 | 1.00 |
47
- | natural killer cell | 9 | 0.50 | 0.18 | 0.75 | 0.44 | 0.00 | 0.67 | 0.59 | 0.17 | 0.31 |
48
- | CD4-positive, alpha-beta T cell | 5 | 0.00 | 0.71 | 0.80 | 0.60 | 0.00 | 0.77 | 0.83 | 1.00 | 0.91 |
49
  | B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
50
  | mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
51
  | plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
52
- | T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
53
  | plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
54
  | mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
55
  | platelet | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
@@ -58,28 +59,28 @@ The train accuracies are computed on the training data.
58
 
59
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
60
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
61
- | cardiac endothelial cell | 9092 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
62
- | regular atrial cardiac myocyte | 5215 | 0.84 | 0.55 | 0.91 | 0.90 | 0.00 | 0.98 | 0.92 | 0.96 | 0.95 |
63
- | ventricular cardiac muscle cell | 2337 | 0.52 | 0.33 | 0.80 | 0.76 | 0.00 | 0.97 | 0.85 | 0.93 | 0.90 |
64
- | pericyte | 1828 | 0.92 | 0.57 | 0.96 | 0.95 | 0.00 | 0.95 | 0.96 | 0.96 | 0.97 |
65
- | fibroblast of cardiac tissue | 1761 | 0.99 | 0.93 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
66
- | smooth muscle cell | 1362 | 0.83 | 0.85 | 0.93 | 0.88 | 0.00 | 0.90 | 0.91 | 0.91 | 0.94 |
67
- | macrophage | 617 | 0.91 | 0.94 | 0.95 | 0.95 | 0.00 | 0.95 | 0.98 | 0.96 | 0.98 |
68
- | CD8-positive, alpha-beta T cell | 276 | 0.77 | 0.80 | 0.86 | 0.83 | 0.00 | 0.96 | 1.00 | 1.00 | 0.95 |
69
- | mesothelial cell | 143 | 0.96 | 0.31 | 0.97 | 0.96 | 0.00 | 0.93 | 0.99 | 0.99 | 0.98 |
70
- | erythrocyte | 131 | 0.83 | 0.71 | 0.95 | 0.91 | 0.00 | 0.89 | 0.86 | 0.91 | 0.87 |
71
- | neutrophil | 128 | 0.99 | 0.99 | 0.98 | 0.96 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |
72
- | monocyte | 112 | 0.56 | 0.45 | 0.80 | 0.83 | 0.00 | 0.72 | 0.98 | 0.93 | 0.97 |
73
- | neuron | 73 | 0.93 | 0.90 | 0.99 | 0.86 | 0.00 | 0.88 | 0.99 | 0.98 | 0.97 |
74
- | natural killer cell | 70 | 0.44 | 0.24 | 0.67 | 0.52 | 0.00 | 0.91 | 1.00 | 1.00 | 0.88 |
75
- | CD4-positive, alpha-beta T cell | 64 | 0.00 | 0.73 | 0.81 | 0.63 | 0.00 | 0.93 | 1.00 | 1.00 | 0.96 |
76
- | B cell | 16 | 0.82 | 0.81 | 0.82 | 0.80 | 0.00 | 0.94 | 1.00 | 1.00 | 0.97 |
77
- | mature NK T cell | 7 | 0.00 | 0.00 | 0.25 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 0.60 |
78
- | plasmacytoid dendritic cell | 6 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.23 | 1.00 | 1.00 | 1.00 |
79
- | T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.06 | 1.00 | 1.00 | 0.50 |
80
- | plasma cell | 3 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 0.31 | 1.00 | 1.00 | 1.00 |
81
- | mast cell | 3 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 0.80 |
82
- | platelet | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.07 | 1.00 | 1.00 | 1.00 |
83
 
84
  </details>
85
 
 
5
  - biology
6
  - genomics
7
  - single-cell
8
+ - anndata_version:0.11.3
9
+ - python_version:3.11.11
10
  - popV
11
  - 'tissue: Heart'
12
  ---
 
32
 
33
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
+ | cardiac endothelial cell | 1007 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
36
+ | regular atrial cardiac myocyte | 602 | 0.84 | 0.65 | 0.84 | 0.77 | 0.00 | 0.84 | 0.91 | 0.95 | 0.89 |
37
+ | ventricular cardiac muscle cell | 264 | 0.49 | 0.39 | 0.69 | 0.50 | 0.00 | 0.35 | 0.83 | 0.92 | 0.70 |
38
+ | pericyte | 201 | 0.90 | 0.71 | 0.92 | 0.85 | 0.00 | 0.93 | 0.94 | 0.94 | 0.94 |
39
+ | fibroblast of cardiac tissue | 180 | 0.99 | 0.95 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |
40
+ | smooth muscle cell | 158 | 0.83 | 0.85 | 0.86 | 0.74 | 0.00 | 0.87 | 0.85 | 0.89 | 0.90 |
41
+ | macrophage | 72 | 0.93 | 0.95 | 0.95 | 0.89 | 0.00 | 0.94 | 0.95 | 0.95 | 0.94 |
42
+ | CD8-positive, alpha-beta T cell | 30 | 0.76 | 0.82 | 0.89 | 0.77 | 0.00 | 0.88 | 0.87 | 0.85 | 0.86 |
43
+ | mesothelial cell | 14 | 0.96 | 0.44 | 0.96 | 0.96 | 0.00 | 0.72 | 0.96 | 0.96 | 0.96 |
44
+ | erythrocyte | 9 | 0.70 | 0.57 | 0.70 | 0.80 | 0.00 | 0.70 | 0.76 | 0.67 | 0.67 |
45
+ | neutrophil | 11 | 0.96 | 0.96 | 0.96 | 0.85 | 0.00 | 0.92 | 0.96 | 0.92 | 0.96 |
46
+ | monocyte | 12 | 0.73 | 0.38 | 0.78 | 0.73 | 0.00 | 0.67 | 0.80 | 0.61 | 0.76 |
47
+ | neuron | 9 | 1.00 | 0.71 | 1.00 | 0.63 | 0.00 | 0.82 | 1.00 | 1.00 | 1.00 |
48
+ | natural killer cell | 9 | 0.56 | 0.18 | 0.67 | 0.31 | 0.00 | 0.74 | 0.53 | 0.53 | 0.46 |
49
+ | CD4-positive, alpha-beta T cell | 5 | 0.71 | 0.83 | 0.91 | 0.25 | 0.00 | 1.00 | 0.89 | 0.83 | 0.91 |
50
  | B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
51
  | mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
52
  | plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
53
+ | T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.18 | 0.00 | 0.00 | 0.00 |
54
  | plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
55
  | mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
56
  | platelet | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
59
 
60
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
61
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
62
+ | cardiac endothelial cell | 9085 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
63
+ | regular atrial cardiac myocyte | 5214 | 0.84 | 0.36 | 0.91 | 0.93 | 0.00 | 0.98 | 0.92 | 0.96 | 0.97 |
64
+ | ventricular cardiac muscle cell | 2335 | 0.52 | 0.36 | 0.81 | 0.82 | 0.00 | 0.97 | 0.85 | 0.93 | 0.93 |
65
+ | pericyte | 1828 | 0.93 | 0.59 | 0.96 | 0.89 | 0.00 | 0.96 | 0.96 | 0.96 | 0.97 |
66
+ | fibroblast of cardiac tissue | 1767 | 0.99 | 0.93 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
67
+ | smooth muscle cell | 1359 | 0.85 | 0.85 | 0.92 | 0.81 | 0.00 | 0.90 | 0.90 | 0.92 | 0.94 |
68
+ | macrophage | 619 | 0.91 | 0.94 | 0.96 | 0.93 | 0.00 | 0.97 | 0.99 | 0.96 | 0.98 |
69
+ | CD8-positive, alpha-beta T cell | 278 | 0.75 | 0.81 | 0.86 | 0.82 | 0.00 | 0.96 | 1.00 | 1.00 | 0.96 |
70
+ | mesothelial cell | 142 | 0.96 | 0.30 | 0.96 | 0.96 | 0.00 | 0.84 | 0.99 | 0.98 | 0.98 |
71
+ | erythrocyte | 134 | 0.85 | 0.71 | 0.94 | 0.90 | 0.00 | 0.81 | 0.88 | 0.88 | 0.87 |
72
+ | neutrophil | 129 | 0.99 | 0.99 | 0.97 | 0.94 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
73
+ | monocyte | 112 | 0.69 | 0.45 | 0.82 | 0.80 | 0.00 | 0.76 | 0.98 | 0.89 | 0.97 |
74
+ | neuron | 73 | 0.93 | 0.90 | 0.99 | 0.89 | 0.00 | 0.79 | 0.97 | 0.95 | 0.96 |
75
+ | natural killer cell | 70 | 0.47 | 0.26 | 0.69 | 0.51 | 0.00 | 0.89 | 0.99 | 0.99 | 0.89 |
76
+ | CD4-positive, alpha-beta T cell | 64 | 0.62 | 0.73 | 0.75 | 0.45 | 0.00 | 0.97 | 1.00 | 0.99 | 0.96 |
77
+ | B cell | 16 | 0.82 | 0.83 | 0.88 | 0.62 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |
78
+ | mature NK T cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.88 | 1.00 | 1.00 | 0.60 |
79
+ | plasmacytoid dendritic cell | 6 | 0.00 | 0.00 | 0.80 | 0.50 | 0.00 | 0.63 | 1.00 | 1.00 | 1.00 |
80
+ | T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 | 1.00 | 1.00 | 1.00 |
81
+ | plasma cell | 3 | 0.00 | 0.00 | 0.80 | 0.67 | 0.00 | 0.20 | 1.00 | 1.00 | 1.00 |
82
+ | mast cell | 3 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
83
+ | platelet | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |
84
 
85
  </details>
86