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README.md
CHANGED
@@ -32,41 +32,41 @@ computed on a 10% random subset of the data that was not used for training.
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| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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| conjunctival epithelial cell |
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| corneal epithelial cell |
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| B cell |
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| retinal blood vessel endothelial cell |
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| CD4-positive, alpha-beta T cell |
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| fibroblast |
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| eye photoreceptor cell |
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| plasma cell |
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| acinar cell |
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| keratocyte |
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| CD8-positive, alpha-beta T cell |
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| myeloid leukocyte |
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| Mueller cell |
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| smooth muscle cell |
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| microglial cell |
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| Schwann cell |
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| macrophage |
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| erythrocyte |
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| muscle cell |
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| monocyte |
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| mature NK T cell |
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| retinal pigment epithelial cell |
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| T cell |
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| retinal bipolar neuron | 3 | 0.
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| natural killer cell |
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| neutrophil |
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| adipocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.
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| mast cell |
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| intermediate monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.
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| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.
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| classical monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| radial glial cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.
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| endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| basophil | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| retina horizontal cell |
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| stromal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| erythroid lineage cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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@@ -76,45 +76,45 @@ The train accuracies are computed on the training data.
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| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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| conjunctival epithelial cell | 9959 | 0.
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| corneal epithelial cell |
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| B cell |
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| retinal blood vessel endothelial cell |
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| CD4-positive, alpha-beta T cell |
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| fibroblast |
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| eye photoreceptor cell |
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| plasma cell |
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| acinar cell |
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| keratocyte |
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| CD8-positive, alpha-beta T cell |
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| myeloid leukocyte |
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| Mueller cell |
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| smooth muscle cell |
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| microglial cell |
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| Schwann cell |
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| macrophage |
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| erythrocyte |
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| muscle cell |
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| monocyte |
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| mature NK T cell |
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| retinal pigment epithelial cell |
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| T cell | 61 | 0.00 | 0.00 | 0.
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| retinal bipolar neuron | 58 | 0.
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| natural killer cell |
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| neutrophil |
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| adipocyte | 38 | 0.00 | 0.00 | 0.76 | 0.
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| mast cell |
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| intermediate monocyte | 27 | 0.00 | 0.05 | 0.
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| myeloid dendritic cell | 27 | 0.00 | 0.
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| classical monocyte | 15 | 0.00 | 0.00 | 0.
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| radial glial cell | 11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.
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| endothelial cell | 13 | 0.00 | 0.00 | 0.
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| basophil | 5 | 0.00 | 0.00 | 0.
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| retina horizontal cell |
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| stromal cell | 3 | 0.00 | 0.00 | 0.
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| erythroid lineage cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 1.00 | 1.00 | 0.
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| non-classical monocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| retinal ganglion cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.
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</details>
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| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
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34 |
| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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+
| conjunctival epithelial cell | 1126 | 0.96 | 0.94 | 0.96 | 0.98 | 0.00 | 0.88 | 0.96 | 0.96 | 0.97 |
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| corneal epithelial cell | 391 | 0.94 | 0.84 | 0.95 | 0.96 | 0.00 | 0.95 | 0.95 | 0.94 | 0.95 |
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| B cell | 427 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
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| retinal blood vessel endothelial cell | 192 | 0.98 | 0.96 | 0.97 | 0.97 | 0.00 | 0.96 | 0.97 | 0.98 | 0.98 |
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| CD4-positive, alpha-beta T cell | 176 | 0.89 | 0.92 | 0.91 | 0.80 | 0.00 | 0.91 | 0.90 | 0.92 | 0.93 |
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| fibroblast | 160 | 0.82 | 0.72 | 0.77 | 0.70 | 0.00 | 0.56 | 0.77 | 0.76 | 0.80 |
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| eye photoreceptor cell | 149 | 0.94 | 0.94 | 0.95 | 0.97 | 0.00 | 0.95 | 0.95 | 0.95 | 0.96 |
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| plasma cell | 148 | 0.96 | 0.94 | 0.97 | 0.93 | 0.00 | 0.95 | 0.99 | 0.97 | 0.99 |
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| acinar cell | 136 | 0.91 | 0.95 | 0.95 | 0.97 | 0.00 | 0.93 | 0.91 | 0.92 | 0.92 |
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| keratocyte | 81 | 0.67 | 0.63 | 0.67 | 0.61 | 0.00 | 0.62 | 0.69 | 0.68 | 0.73 |
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| CD8-positive, alpha-beta T cell | 81 | 0.78 | 0.81 | 0.80 | 0.63 | 0.00 | 0.83 | 0.81 | 0.83 | 0.85 |
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| myeloid leukocyte | 73 | 0.79 | 0.81 | 0.77 | 0.75 | 0.00 | 0.69 | 0.80 | 0.84 | 0.86 |
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| Mueller cell | 54 | 0.82 | 0.78 | 0.84 | 0.92 | 0.00 | 0.84 | 0.85 | 0.82 | 0.86 |
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| smooth muscle cell | 47 | 0.94 | 0.96 | 0.97 | 0.94 | 0.00 | 0.91 | 0.95 | 0.95 | 0.95 |
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| microglial cell | 34 | 0.63 | 0.75 | 0.73 | 0.54 | 0.00 | 0.68 | 0.72 | 0.70 | 0.73 |
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| Schwann cell | 30 | 0.87 | 0.90 | 0.88 | 0.89 | 0.00 | 0.76 | 0.92 | 0.78 | 0.87 |
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| macrophage | 22 | 0.50 | 0.17 | 0.50 | 0.40 | 0.00 | 0.51 | 0.70 | 0.70 | 0.67 |
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| erythrocyte | 14 | 0.97 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 0.93 | 1.00 |
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| muscle cell | 13 | 0.96 | 0.76 | 0.96 | 0.96 | 0.00 | 0.79 | 0.93 | 0.90 | 1.00 |
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| monocyte | 9 | 0.00 | 0.76 | 0.55 | 0.35 | 0.00 | 0.39 | 0.35 | 0.44 | 0.70 |
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| mature NK T cell | 6 | 0.67 | 0.00 | 0.40 | 0.29 | 0.00 | 0.67 | 0.80 | 0.80 | 0.67 |
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| retinal pigment epithelial cell | 7 | 0.92 | 0.92 | 0.92 | 0.92 | 0.00 | 1.00 | 0.92 | 0.83 | 0.92 |
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| T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| retinal bipolar neuron | 3 | 0.29 | 0.00 | 0.33 | 0.40 | 0.00 | 0.44 | 0.40 | 0.33 | 0.33 |
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| natural killer cell | 3 | 0.57 | 0.50 | 0.00 | 0.50 | 0.00 | 0.57 | 0.33 | 0.33 | 0.40 |
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| neutrophil | 5 | 1.00 | 0.91 | 0.89 | 0.57 | 0.00 | 0.91 | 1.00 | 0.89 | 1.00 |
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| adipocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 |
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| mast cell | 5 | 0.62 | 0.67 | 0.75 | 0.89 | 0.00 | 0.83 | 0.91 | 1.00 | 0.91 |
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| intermediate monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 |
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| classical monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| radial glial cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.03 | 0.00 | 0.00 | 0.00 |
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| endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| basophil | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| retina horizontal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| stromal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| erythroid lineage cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
|
78 |
| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
|
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| conjunctival epithelial cell | 9959 | 0.96 | 0.92 | 0.98 | 0.98 | 0.00 | 0.89 | 0.97 | 0.96 | 0.98 |
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| corneal epithelial cell | 3796 | 0.93 | 0.78 | 0.97 | 0.97 | 0.00 | 0.95 | 0.96 | 0.94 | 0.96 |
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| B cell | 3726 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
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82 |
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| retinal blood vessel endothelial cell | 1893 | 0.98 | 0.97 | 0.98 | 0.98 | 0.00 | 0.97 | 0.98 | 0.98 | 0.98 |
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83 |
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| CD4-positive, alpha-beta T cell | 1436 | 0.86 | 0.85 | 0.91 | 0.84 | 0.00 | 0.89 | 0.93 | 0.94 | 0.93 |
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84 |
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| fibroblast | 1427 | 0.80 | 0.69 | 0.88 | 0.85 | 0.00 | 0.76 | 0.88 | 0.89 | 0.90 |
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| eye photoreceptor cell | 1385 | 0.94 | 0.94 | 0.97 | 0.97 | 0.00 | 0.95 | 0.98 | 0.98 | 0.98 |
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| plasma cell | 1199 | 0.95 | 0.92 | 0.98 | 0.95 | 0.00 | 0.94 | 0.99 | 0.98 | 0.99 |
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87 |
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| acinar cell | 1209 | 0.90 | 0.92 | 0.98 | 0.97 | 0.00 | 0.94 | 0.95 | 0.95 | 0.96 |
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| keratocyte | 905 | 0.74 | 0.62 | 0.84 | 0.82 | 0.00 | 0.81 | 0.87 | 0.89 | 0.90 |
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89 |
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| CD8-positive, alpha-beta T cell | 855 | 0.79 | 0.80 | 0.86 | 0.74 | 0.00 | 0.85 | 0.91 | 0.91 | 0.91 |
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90 |
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| myeloid leukocyte | 575 | 0.74 | 0.74 | 0.83 | 0.83 | 0.00 | 0.89 | 0.97 | 0.98 | 0.93 |
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| Mueller cell | 451 | 0.80 | 0.74 | 0.89 | 0.88 | 0.00 | 0.89 | 0.95 | 0.95 | 0.93 |
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| smooth muscle cell | 408 | 0.92 | 0.94 | 0.97 | 0.94 | 0.00 | 0.92 | 0.98 | 0.98 | 0.97 |
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| microglial cell | 374 | 0.68 | 0.73 | 0.81 | 0.73 | 0.00 | 0.86 | 0.98 | 0.98 | 0.92 |
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| Schwann cell | 253 | 0.84 | 0.84 | 0.90 | 0.90 | 0.00 | 0.77 | 0.94 | 0.94 | 0.91 |
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| macrophage | 132 | 0.34 | 0.17 | 0.61 | 0.59 | 0.00 | 0.77 | 0.97 | 0.99 | 0.91 |
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| erythrocyte | 134 | 0.94 | 0.92 | 0.98 | 0.99 | 0.00 | 0.99 | 1.00 | 1.00 | 0.98 |
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| muscle cell | 129 | 0.86 | 0.47 | 0.95 | 0.91 | 0.00 | 0.85 | 0.95 | 0.97 | 0.98 |
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| monocyte | 77 | 0.00 | 0.52 | 0.63 | 0.57 | 0.00 | 0.60 | 0.99 | 0.99 | 0.94 |
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| mature NK T cell | 66 | 0.39 | 0.06 | 0.53 | 0.16 | 0.00 | 0.90 | 0.98 | 0.97 | 0.89 |
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100 |
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| retinal pigment epithelial cell | 60 | 0.98 | 1.00 | 0.98 | 0.95 | 0.00 | 0.95 | 1.00 | 1.00 | 1.00 |
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101 |
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| T cell | 61 | 0.00 | 0.00 | 0.17 | 0.00 | 0.00 | 0.48 | 0.95 | 0.88 | 0.78 |
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102 |
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| retinal bipolar neuron | 58 | 0.84 | 0.83 | 0.91 | 0.78 | 0.00 | 0.84 | 0.99 | 0.99 | 0.92 |
|
103 |
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| natural killer cell | 51 | 0.64 | 0.44 | 0.64 | 0.20 | 0.00 | 0.81 | 0.86 | 0.89 | 0.90 |
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104 |
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| neutrophil | 46 | 0.92 | 0.85 | 0.86 | 0.69 | 0.00 | 0.93 | 1.00 | 0.99 | 0.99 |
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105 |
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| adipocyte | 38 | 0.00 | 0.00 | 0.76 | 0.57 | 0.00 | 0.77 | 0.85 | 0.78 | 0.86 |
|
106 |
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| mast cell | 31 | 0.50 | 0.69 | 0.81 | 0.66 | 0.00 | 0.95 | 1.00 | 0.95 | 0.94 |
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107 |
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| intermediate monocyte | 27 | 0.00 | 0.05 | 0.55 | 0.21 | 0.00 | 0.84 | 0.98 | 1.00 | 0.94 |
|
108 |
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| myeloid dendritic cell | 27 | 0.00 | 0.24 | 0.57 | 0.36 | 0.00 | 0.64 | 0.84 | 0.78 | 0.92 |
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109 |
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| classical monocyte | 15 | 0.00 | 0.00 | 0.36 | 0.33 | 0.00 | 0.94 | 1.00 | 1.00 | 0.93 |
|
110 |
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| radial glial cell | 11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.02 | 0.76 | 0.71 | 1.00 |
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111 |
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| endothelial cell | 13 | 0.00 | 0.00 | 0.33 | 0.00 | 0.00 | 0.51 | 0.81 | 0.81 | 0.73 |
|
112 |
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| basophil | 5 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 0.89 |
|
113 |
+
| retina horizontal cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.55 | 1.00 | 1.00 | 0.75 |
|
114 |
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| stromal cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 0.60 | 1.00 |
|
115 |
+
| erythroid lineage cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 1.00 | 1.00 | 0.00 |
|
116 |
+
| non-classical monocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
|
117 |
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| retinal ganglion cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |
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</details>
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