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README.md

@@ -5,7 +5,8 @@ tags:
 - biology
 - genomics
 - single-cell
-- anndata_version:0.11.1
+- anndata_version:0.11.3
+- python_version:3.11.11
 - popV
 - 'tissue: Ear'
 ---
@@ -31,18 +32,18 @@ computed on a 10% random subset of the data that was not used for training.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| stromal cell | 107 | 1.00 | 0.96 | 0.97 | 0.97 | 0.00 | 0.97 | 0.99 | 0.97 | 0.99 |
-| pericyte | 80 | 0.99 | 0.99 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.98 |
-| macrophage | 39 | 0.96 | 0.95 | 0.96 | 0.94 | 0.00 | 0.97 | 0.95 | 0.94 | 0.95 |
-| supporting cell of vestibular epithelium | 19 | 1.00 | 0.94 | 0.97 | 0.97 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |
-| endothelial cell of vascular tree | 21 | 1.00 | 0.90 | 0.86 | 0.89 | 0.00 | 0.88 | 0.98 | 0.84 | 0.98 |
-| melanocyte | 14 | 0.96 | 0.92 | 0.96 | 0.93 | 0.00 | 1.00 | 1.00 | 0.96 | 0.96 |
-| hematopoietic cell | 9 | 0.89 | 0.89 | 0.75 | 0.82 | 0.00 | 0.82 | 0.94 | 0.80 | 0.88 |
-| vascular associated smooth muscle cell | 10 | 0.95 | 0.75 | 1.00 | 1.00 | 0.00 | 0.95 | 0.95 | 1.00 | 0.95 |
-| vestibular dark cell | 3 | 1.00 | 0.80 | 0.80 | 0.67 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |
+| stromal cell | 108 | 0.98 | 0.96 | 0.98 | 0.96 | 0.00 | 0.94 | 0.98 | 0.99 | 0.99 |
+| pericyte | 93 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 0.98 | 0.98 | 0.99 | 0.99 |
+| macrophage | 25 | 0.92 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |
+| supporting cell of vestibular epithelium | 28 | 1.00 | 1.00 | 0.98 | 0.95 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
+| endothelial cell of vascular tree | 12 | 1.00 | 0.86 | 0.96 | 0.79 | 0.00 | 0.80 | 0.92 | 0.96 | 0.96 |
+| melanocyte | 14 | 0.96 | 0.92 | 0.96 | 0.88 | 0.00 | 0.92 | 0.96 | 0.96 | 0.96 |
+| hematopoietic cell | 11 | 0.96 | 0.92 | 0.96 | 0.90 | 0.00 | 0.85 | 0.95 | 1.00 | 1.00 |
+| vascular associated smooth muscle cell | 9 | 0.90 | 0.75 | 0.90 | 0.86 | 0.00 | 0.72 | 0.95 | 0.95 | 0.95 |
+| vestibular dark cell | 5 | 1.00 | 1.00 | 1.00 | 0.67 | 0.00 | 0.91 | 1.00 | 1.00 | 1.00 |
 | neutrophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| CD4-positive, alpha-beta T cell | 3 | 0.67 | 0.00 | 0.80 | 0.00 | 0.00 | 0.50 | 0.50 | 0.50 | 0.50 |
-| intermediate monocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
+| CD4-positive, alpha-beta T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 1.00 | 1.00 |
+| intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | CD8-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
@@ -52,22 +53,22 @@ The train accuracies are computed on the training data.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| stromal cell | 1013 | 0.98 | 0.95 | 0.99 | 0.98 | 0.00 | 0.97 | 1.00 | 1.00 | 0.99 |
-| pericyte | 771 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |
-| macrophage | 237 | 0.98 | 0.99 | 0.99 | 0.98 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |
-| supporting cell of vestibular epithelium | 251 | 0.99 | 0.92 | 0.99 | 0.98 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
-| endothelial cell of vascular tree | 131 | 0.95 | 0.77 | 0.94 | 0.92 | 0.00 | 0.86 | 0.98 | 0.98 | 0.99 |
-| melanocyte | 114 | 0.99 | 0.93 | 1.00 | 0.97 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
-| hematopoietic cell | 91 | 0.84 | 0.77 | 0.87 | 0.85 | 0.00 | 0.92 | 0.99 | 0.99 | 0.95 |
-| vascular associated smooth muscle cell | 73 | 0.91 | 0.74 | 0.95 | 0.94 | 0.00 | 0.92 | 0.98 | 0.98 | 0.97 |
-| vestibular dark cell | 46 | 0.94 | 0.88 | 0.98 | 0.85 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |
-| neutrophil | 9 | 0.62 | 0.90 | 0.86 | 0.57 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
-| CD4-positive, alpha-beta T cell | 4 | 0.33 | 0.00 | 0.40 | 0.60 | 0.00 | 0.86 | 1.00 | 1.00 | 0.86 |
-| intermediate monocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 0.67 |
-| mast cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
-| monocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
-| CD8-positive, alpha-beta T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
-| B cell | 1 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
+| stromal cell | 1012 | 0.98 | 0.96 | 0.99 | 0.97 | 0.00 | 0.98 | 1.00 | 0.99 | 0.99 |
+| pericyte | 758 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |
+| macrophage | 251 | 0.97 | 0.98 | 0.99 | 0.96 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
+| supporting cell of vestibular epithelium | 242 | 0.99 | 0.89 | 0.99 | 0.96 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
+| endothelial cell of vascular tree | 140 | 0.92 | 0.81 | 0.97 | 0.90 | 0.00 | 0.90 | 0.98 | 0.97 | 0.98 |
+| melanocyte | 114 | 0.99 | 0.92 | 0.99 | 0.94 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
+| hematopoietic cell | 89 | 0.84 | 0.78 | 0.86 | 0.80 | 0.00 | 0.89 | 0.98 | 0.99 | 0.93 |
+| vascular associated smooth muscle cell | 74 | 0.91 | 0.74 | 0.96 | 0.73 | 0.00 | 0.86 | 0.97 | 0.98 | 0.97 |
+| vestibular dark cell | 44 | 0.93 | 0.90 | 0.97 | 0.63 | 0.00 | 0.98 | 1.00 | 1.00 | 0.98 |
+| neutrophil | 9 | 0.47 | 0.90 | 0.90 | 0.36 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
+| CD4-positive, alpha-beta T cell | 6 | 0.00 | 0.29 | 0.67 | 0.00 | 0.00 | 0.77 | 1.00 | 1.00 | 1.00 |
+| intermediate monocyte | 3 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.50 |
+| mast cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 0.67 |
+| monocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
+| CD8-positive, alpha-beta T cell | 2 | 0.00 | 0.00 | 0.40 | 0.40 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |
+| B cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |
 
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