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.gitattributes

@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| type B pancreatic cell | 124 | 0.93 | 0.93 | 0.93 | 0.92 | 0.00 | 0.94 | 0.95 | 0.93 | 0.94 |\n| pancreatic acinar cell | 62 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| pancreatic A cell | 57 | 0.90 | 0.89 | 0.87 | 0.83 | 0.00 | 0.86 | 0.91 | 0.91 | 0.89 |\n| pancreatic ductal cell | 34 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| endothelial cell | 23 | 0.98 | 0.98 | 0.98 | 0.88 | 0.00 | 0.88 | 0.98 | 0.95 | 0.98 |\n| pancreatic D cell | 16 | 0.86 | 0.91 | 0.88 | 0.82 | 0.00 | 0.97 | 0.94 | 0.85 | 0.91 |\n| leukocyte | 17 | 1.00 | 1.00 | 1.00 | 0.92 | 0.00 | 0.89 | 1.00 | 0.94 | 1.00 |\n| pancreatic PP cell | 5 | 0.73 | 0.47 | 0.62 | 0.22 | 0.00 | 0.60 | 0.80 | 0.80 | 0.73 |\n| pancreatic stellate cell | 1 | 0.67 | 0.67 | 0.67 | 0.50 | 0.00 | 0.67 | 0.67 | 1.00 | 0.67 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| type B pancreatic cell | 1218 | 0.96 | 0.96 | 0.96 | 0.97 | 0.00 | 0.97 | 0.98 | 0.98 | 0.97 |\n| pancreatic acinar cell | 514 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.97 | 1.00 | 1.00 | 0.99 |\n| pancreatic A cell | 464 | 0.92 | 0.89 | 0.91 | 0.89 | 0.00 | 0.91 | 0.96 | 0.96 | 0.94 |\n| pancreatic ductal cell | 279 | 0.99 | 1.00 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| endothelial cell | 179 | 0.88 | 0.87 | 0.93 | 0.90 | 0.00 | 0.90 | 1.00 | 1.00 | 0.98 |\n| pancreatic D cell | 175 | 0.93 | 0.94 | 0.95 | 0.83 | 0.00 | 0.93 | 0.96 | 0.96 | 0.96 |\n| leukocyte | 103 | 0.91 | 0.94 | 0.94 | 0.91 | 0.00 | 0.88 | 1.00 | 1.00 | 0.99 |\n| pancreatic PP cell | 66 | 0.83 | 0.63 | 0.83 | 0.69 | 0.00 | 0.83 | 0.99 | 0.99 | 0.94 |\n| pancreatic stellate cell | 47 | 0.92 | 0.94 | 0.99 | 0.88 | 0.00 | 0.95 | 1.00 | 1.00 | 0.98 |"
+}

celltypist.pkl

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checkpoint

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harmony_knn_classifier.joblib

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obo_dag.joblib

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popv_output/predictions.csv

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