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Browse files- .gitattributes +1 -0
- OnClass.data-00000-of-00001 +3 -0
- OnClass.index +0 -0
- OnClass.meta +0 -0
- OnClass.npz +3 -0
- accuracies.json +4 -0
- celltypist.pkl +3 -0
- checkpoint +2 -0
- harmony_knn_classifier.joblib +3 -0
- obo_dag.joblib +3 -0
- popv_output/predictions.csv +0 -0
- preprocessing.json +0 -0
- pynndescent_index.joblib +3 -0
- scanvi/model.pt +3 -0
- scvi/model.pt +3 -0
- scvi_knn_classifier.joblib +3 -0
- svm_classifier_cuml.joblib +3 -0
- xgboost_classifier.model +3 -0
.gitattributes
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
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OnClass.data-00000-of-00001
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version https://git-lfs.github.com/spec/v1
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size 27239224
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OnClass.index
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Binary file (222 Bytes). View file
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OnClass.meta
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OnClass.npz
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version https://git-lfs.github.com/spec/v1
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size 144124667
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accuracies.json
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{
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"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| type B pancreatic cell | 273 | 0.99 | 0.99 | 0.54 | 0.99 | 0.00 | 1.00 | 1.00 | 0.99 | 0.99 |\n| pancreatic acinar cell | 205 | 1.00 | 1.00 | 0.71 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| pancreatic ductal cell | 32 | 0.98 | 0.97 | 0.98 | 0.97 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |\n| pancreatic A cell | 29 | 0.85 | 0.89 | 0.65 | 0.85 | 0.00 | 0.94 | 0.97 | 0.92 | 0.94 |\n| pancreatic D cell | 28 | 1.00 | 1.00 | 1.00 | 0.95 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| leukocyte | 19 | 1.00 | 0.97 | 1.00 | 0.95 | 0.00 | 0.97 | 0.97 | 0.97 | 0.97 |\n| pancreatic PP cell | 13 | 0.67 | 0.70 | 0.62 | 0.83 | 0.00 | 0.87 | 0.96 | 0.92 | 0.92 |\n| endothelial cell | 11 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| pancreatic stellate cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
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"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| type B pancreatic cell | 2401 | 0.99 | 0.99 | 0.70 | 0.99 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| pancreatic acinar cell | 1934 | 1.00 | 1.00 | 0.78 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| pancreatic ductal cell | 301 | 0.98 | 0.98 | 1.00 | 0.96 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| pancreatic A cell | 281 | 0.88 | 0.84 | 0.81 | 0.90 | 0.00 | 0.97 | 0.98 | 0.98 | 0.97 |\n| pancreatic D cell | 243 | 0.99 | 0.99 | 0.99 | 0.95 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |\n| leukocyte | 161 | 1.00 | 0.99 | 1.00 | 0.94 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| pancreatic PP cell | 144 | 0.75 | 0.65 | 0.71 | 0.90 | 0.00 | 0.98 | 0.99 | 1.00 | 0.96 |\n| endothelial cell | 94 | 0.99 | 0.98 | 0.99 | 0.92 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| pancreatic stellate cell | 21 | 1.00 | 0.95 | 0.95 | 0.24 | 0.00 | 0.95 | 1.00 | 0.98 | 1.00 |"
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}
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celltypist.pkl
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version https://git-lfs.github.com/spec/v1
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size 325423
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checkpoint
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model_checkpoint_path: "OnClass"
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all_model_checkpoint_paths: "OnClass"
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harmony_knn_classifier.joblib
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version https://git-lfs.github.com/spec/v1
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obo_dag.joblib
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version https://git-lfs.github.com/spec/v1
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size 321386
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popv_output/predictions.csv
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preprocessing.json
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pynndescent_index.joblib
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version https://git-lfs.github.com/spec/v1
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size 4554508
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scanvi/model.pt
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version https://git-lfs.github.com/spec/v1
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scvi/model.pt
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scvi_knn_classifier.joblib
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svm_classifier_cuml.joblib
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xgboost_classifier.model
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version https://git-lfs.github.com/spec/v1
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