Daily Papers

Speculative decoding (SD) has attracted a significant amount of research attention due to the substantial speedup it can achieve for LLM inference. However, despite the high speedups they offer, speculative decoding methods often achieve optimal performance on high-end devices or with a substantial GPU memory overhead. Given limited memory and the necessity of quantization, a high-performing model on a high-end GPU can slow down by up to 7 times. To this end, we propose Skippy Simultaneous Speculative Decoding (or S3D), a cost-effective self-speculative SD method based on simultaneous multi-token decoding and mid-layer skipping. When compared against recent effective open-source SD systems, our method has achieved one of the top performance-memory ratios while requiring minimal architecture changes and training data. Leveraging our memory efficiency, we created a smaller yet more effective SD model based on Phi-3. It is 1.4 to 2 times faster than the quantized EAGLE model and operates in half-precision while using less VRAM.

The dynamics of biomolecules are crucial for our understanding of their functioning in living systems. However, current 3D imaging techniques, such as cryogenic electron microscopy (cryo-EM), require freezing the sample, which limits the observation of their conformational changes in real time. The innovative liquid-phase electron microscopy (liquid-phase EM) technique allows molecules to be placed in the native liquid environment, providing a unique opportunity to observe their dynamics. In this paper, we propose TEMPOR, a Temporal Electron MicroscoPy Object Reconstruction algorithm for liquid-phase EM that leverages an implicit neural representation (INR) and a dynamical variational auto-encoder (DVAE) to recover time series of molecular structures. We demonstrate its advantages in recovering different motion dynamics from two simulated datasets, 7bcq and Cas9. To our knowledge, our work is the first attempt to directly recover 3D structures of a temporally-varying particle from liquid-phase EM movies. It provides a promising new approach for studying molecules' 3D dynamics in structural biology.