Daily Papers

A principle behind dozens of attribution methods is to take the prediction difference between before-and-after an input feature (here, a token) is removed as its attribution. A popular Input Marginalization (IM) method (Kim et al., 2020) uses BERT to replace a token, yielding more plausible counterfactuals. While Kim et al. (2020) reported that IM is effective, we find this conclusion not convincing as the DeletionBERT metric used in their paper is biased towards IM. Importantly, this bias exists in Deletion-based metrics, including Insertion, Sufficiency, and Comprehensiveness. Furthermore, our rigorous evaluation using 6 metrics and 3 datasets finds no evidence that IM is better than a Leave-One-Out (LOO) baseline. We find two reasons why IM is not better than LOO: (1) deleting a single word from the input only marginally reduces a classifier's accuracy; and (2) a highly predictable word is always given near-zero attribution, regardless of its true importance to the classifier. In contrast, making LIME samples more natural via BERT consistently improves LIME accuracy under several ROAR metrics.

Foundation models have been transformational in machine learning fields such as natural language processing and computer vision. Similar success in atomic property prediction has been limited due to the challenges of training effective models across multiple chemical domains. To address this, we introduce Joint Multi-domain Pre-training (JMP), a supervised pre-training strategy that simultaneously trains on multiple datasets from different chemical domains, treating each dataset as a unique pre-training task within a multi-task framework. Our combined training dataset consists of sim120M systems from OC20, OC22, ANI-1x, and Transition-1x. We evaluate performance and generalization by fine-tuning over a diverse set of downstream tasks and datasets including: QM9, rMD17, MatBench, QMOF, SPICE, and MD22. JMP demonstrates an average improvement of 59% over training from scratch, and matches or sets state-of-the-art on 34 out of 40 tasks. Our work highlights the potential of pre-training strategies that utilize diverse data to advance property prediction across chemical domains, especially for low-data tasks.