Title: Atomized Deep Learning Models. Abstract: Deep learning models often tackle the intra-sample structure, such as the order of words in a sentence and pixels in an image, but have not pay much attention to the inter-sample relationship. In this paper, we show that explicitly modeling the inter-sample structure to be more discretized can potentially help model's expressivity. We propose a novel method, Atom Modeling, that can discretize a continuous latent space by drawing an analogy between a data point and an {\it atom}, which is naturally spaced away from other atoms with distances depending on their intra structures. Specifically, we model each data point as an atom composed of electrons, protons, and neutrons and minimize the potential energy caused by the interatomic force among data points. Through experiments with qualitative analysis in our proposed Atom Modeling on synthetic and real datasets, we find that Atom Modeling can improve the performance by maintaining the inter-sample relation and can capture an interpretable intra-sample relation by mapping each component in a data point to electron/proton/neutron.