Catalyzes the hydrolysis of the thioester bond of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) in peroxisomes, a necessary step to form the naphthoquinone ring of phylloquinone (vitamin K(1)). Is not active on benzoyl-CoA, phenylacetyl-CoA, succinyl-CoA and palmitoyl-CoA thioesters. Cofactor biosynthesis; phylloquinone biosynthesis. Quinol/quinone metabolism; 1,4-dihydroxy-2-naphthoate biosynthesis; 1,4-dihydroxy-2-naphthoate from chorismate: step 7/7. Homotetramers. Mostly expressed in roots, stems, leaves and siliques. Reduced DHNA-CoA thioesterase activity and phylloquinone content. May originate from a horizontal gene transfer with a bacterial species of the Lactobacillales order. Belongs to the 4-hydroxybenzoyl-CoA thioesterase family. DHNA-CoA hydrolase subfamily.