The Mohajer-6 has a rectangular fuselage, an upwards-sloping nose, twin tailbooms, a top-mounted horizontal stabilizer, uncanted wingtips, straight wings mounted high and to the rear of the body, and air intakes on the top and bottom of the engine. The Mohajer-6 is controlled by two elevators on the horizontal stabilizer, rudders on the vertical stabilizers, and two flaps per wing. Unlike other Mohajer variants, it has a three-bladed propeller. The Mohajer-6 has a wingspan of 10 meters and is 5.67 meters long. It is similar in shape to the Selex ES Falco.