He was born in the village of Gur in the area of Has, near Prizren in 1630. Its exact location is unknown, but Robert Elsie has proposes two modern day villages of Gjonaj and Breg Drini in Prizren area. Bogdani was educated in the traditions of the Catholic church. His uncle Andrea Bogdani (c. 1600–1683) was Archbishop of Skopje and author of a Latin-Albanian grammar, now lost. Bogdani is said to have received his initial schooling from the Franciscans at Chiprovtsi in modern northwestern Bulgaria and then studied at the Illyrian College of Loreto near Ancona, as had his predecessors Pjetër Budi and Frang Bardhi. From 1651 to 1654 he served as a parish priest in Pult and from 1654 to 1656 studied at the College of the Propaganda Fide in Rome where he graduated as a doctor of philosophy and theology. In 1656, he was named Bishop of Shkodra, a post he held for twenty-one years, and was also appointed Administrator of the Archdiocese of Antivari (Bar) until 1671.