On 10 April 2014, arising out of the police investigation into the Omagh bombing, Daly was charged with the murder of 29 people in Omagh in 1998, two charges linked to the explosion and two counts linked to an attempted explosion in Lisburn in April 1998. He appeared in court on 11 April and was remanded in custody due to the possibility he may flee the jurisdiction. On 6 May, Daly's case was adjourned for four weeks at the prosecutor's request.