He later took the position of assistant-manager at King's Lynn, under Keith Webb. While Glover was at the club, Lynn were promoted to the Conference North in 2007–08. Two years later, he and Webb resigned. He later worked under Nigel Clough and Steve McClaren at Derby County, where he became Senior Professional Development Coach. In June 2016, he was appointed as Peterborough United's assistant manager by Grant McCann after the pair got to know each other on a coaching course. His contract was terminated by director of football Barry Fry on 20 March; Glover said "results have been poor and I think someone has carried the can for that."