The reviews for the Virtual Console release ranged from mixed to positive, applauding the gameplay and depth, but criticizing the choice to release the primitive NES version over the more comprehensive SNES version. Lucas Thomas of IGN awarded the game an 8.0 out of 10, praising the game's unique approach to the puzzle genre and graphics that "took full advantage of the 8-bit hardware were full of character", but recommended "saving [one's] points for the SNES version, if it becomes available." Aaron Thomas of GameSpot gave "Wario's Woods" a score of 7.0 out of 10, admiring the "fun, addictive game play" and "surprising amount of depth", but criticizing the game's repetitive music and poor sound effects, adding that he also prefers the "ideal" SNES version. Nintendo Life scored the game 6 out of 10, stating that while the game is fun, "enjoyment for most will no doubt be short-lived."