In a prelude to the "Secret Invasion" storyline, Professor X was at the meeting of the Illuminati when it came to the discussion about the Skrulls planning an invasion by taking out Earth's heroes and posing as them. He claims he was unable to distinguish that Black Bolt had been replaced by a Skrull, and his powers were tested quickly by the Black Bolt Skrull. Professor X leaves after learning even he can no longer trust the others, yet appears to have severely restricted the number of people he informs of the forthcoming alien invasion, as the X-Men were not prepared for the Skrulls, at least at first. Xavier has not seen again during the events of "Secret Invasion", though his X-Men in San Francisco are successful at repelling the invaders there through the use of the modified Legacy Virus.