In 2007–08 Molsey finished bottom of Division One South and were relegated to the Premier Division of the Combined Counties League. In 2012–13 they won the Southern Combination Challenge Cup again. They won the Premier Division title in 2014–15 and were promoted back to Division One South of the Isthmian League, as well as winning the Southern Combination Challenge Cup, a trophy they retained the following season. Following league reorganisation, the club were placed in the South Central Division in 2018. The 2018–19 season saw them finished second-from-bottom of the division, resulting in relegation to the Premier Division of the Combined Counties League.