Following promotion from the NCELP Scarborough Athletic competed as members of the Northern Premier League with the club entered to play in the Northern Premier League Division One South for the 2013–14 season. The club also entered the FA Trophy for the first time winning through three ties to eventually go out at the 3rd Round Qualifying stage. Boro made a slow start to life in the NPL, with just one win from their first seven matches; however they did reach the 2nd Qualifying Round of the FA Cup for the first time. However, from late September onwards results showed a dramatic improvement, and twelve wins from the next fifteen league fixtures lifted Boro into play-off contention by the start of the new year. Results were inconsistent from January onwards and by the end of March Boro were realistically out of the play-off chase & the season ended with the club in 7th place.