In 1993, Flood shifted from engineering U2's albums to producing them, sharing duties with Brian Eno and The Edge on "Zooropa". In 1994, he worked again with Nine Inch Nails, this time on "The Downward Spiral". In 1995, Flood co-produced The Smashing Pumpkins' album "Mellon Collie and the Infinite Sadness" with longtime collaborator Alan Moulder, and PJ Harvey's album "To Bring You My Love". Shortly thereafter, he assisted producer Nellee Hooper on Sneaker Pimps' "Becoming X". He also collaborated with Dave Bessell, Gary Stout and Ed Buller to create Node; an analogue synth heavy project that produced a single album, "Node".