In 1981, Timoney was awarded an NYPD scholarship to pursue a second master's degree (with a paid one-year leave of absence) in urban planning at Hunter College. In his 2010 biography, Timoney describes this as a turning point in his career, bringing him into contact with several influential academics (including Donna Shalala) and the entire field of public policy. Although he initially returned to duty as a sergeant in Harlem's 25th Precinct, only four months later he was reassigned as a research analyst for NYPD Chief of Operations Patrick V. Murphy, working on the review, revision, and dissemination of operational policies and procedures. During this time, Timoney worked particularly on the issues of high-speed police chases and police use of deadly force. When Murphy was promoted to first deputy commissioner in 1984 by incoming Commissioner Ben Ward, Timoney continued to work for the new Chief of Operations, Robert J. Johnston, Jr.