Nowotny received her doctorate of jurisprudence at the University of Vienna in 1959. After completing her degree, she faced opposition to her application for an assistant professorship in the Department of Criminology there on the basis of her being a woman. She agreed with the hiring professor that if a more capable man applied for the position, he could have the job. In the end, she was hired to the position. It was there that she became interested in the sociology of science. In 1965, she moved to New York City with her husband, where she enrolled in a sociology doctoral program. There, she met Paul Lazarsfeld and Robert K. Merton, who mentored her throughout her education.