She pursued graduate studies at night school at New York University Tandon School of Engineering (then Brooklyn Polytechnic Institute), but after several years of long-range commuting, she was informed that she would no longer be able to continue her doctorate on a part-time basis, but would need to give up her job and go to school full-time. Elion made a critical decision in her life, and stayed with her job and give up the pursuit of her doctorate. She never obtained a formal Ph.D., but was later awarded an honorary Ph.D. from New York University Tandon School of Engineering (then Polytechnic University of New York) in 1989 and an honorary S.D. degree from Harvard University in 1998.