"Jun'yō" ferried aircraft to Singapore in mid-August and troops and equipment to the Caroline Islands the following month. On 5 November 1943, she was hit by a torpedo, but the damage was light, other than the disabled rudder. The ship was under repair and refit until 29 February 1944 at Kure. The air groups of both carriers were reconstituted at Singapore on 1 November. The aircraft transferred to Truk on 1 December and then to Kavieng at the end of December before reaching Rabaul on 25 January 1944; the survivors were back at Truk on 20 February and the air group was disbanded.