On September 28, 2004, Georgian President Mikheil Saakashvili appointed Alasania as chairman of the Tbilisi-based Abkhazian government-in-exile. On February 15, 2005, Saakashvili also made him his aide in the Georgian-Abkhaz peace talks, a move that was initially opposed by the Abkhaz secessionist leadership, but later accepted under pressure from the U.N. mission (UNOMIG). During this tenure, Alasania succeeding in establishing good ties with several Abkhaz politicians and was instrumental in resuming the Georgian-Abkhaz Coordination Council, a tool for direct talks between the two sides, in March 2006. That month, however, he was appointed as Georgia's Permanent Representative to the U.N., a decision which triggered some controversy, with critics saying that sidelining Alasania from the Georgian-Abkhaz negotiations would hinder the positive momentum recently observed in the process.