More than 200 Confederate soldiers are buried in Section "O" of the cemetery, with 30–40 buried in a row near the National Cemetery. The original wooden markers in Section "O" were replaced with stone markers in 1880–1881. A number of markers are marked as unknown. Included in the Section "O" burials is a Confederate Brigadier General, Alpheus Baker. There are two other Confederate generals buried in other locations in the cemetery. In the addition to Section "O" (lot 267½) are a number of residents of the Kentucky Confederate Home, who died around the start of the 20th century. The confederate flag flies over the area.