In February 2016, Choi finished runner-up at the Farmers Insurance Open to Brandt Snedeker, during a Monday finish to the weather disrupted event. This was notable because it was the first time in Choi's PGA Tour career that he did not convert a 54-hole lead or co-lead into a win. He was previously 5 for 5 in converted 54 holes leads to victories. The result moved Choi up 197 places in the world rankings from 334th to 137th. Choi continued his good early season from at the Northern Trust Open where he finished in a tie for fifth, despite holding the co-lead during the final round. This moved Choi to just outside the top 100 at 102nd in the rankings.