In 2006, the club had its most success in its history under Nelson Mauricio Ancheta, who filled the roster with players discarded by more prominent teams. The club won its first Copa Presidente 1–0 over C.D. Águila and the second championship title in the club history. Once also won the grand finale of the 17 December 2006 Apertura Tournament against C.D. FAS despite starting from behind with an own goal by Nelson Nerio. Once scored two goals in overtime, winning 3–1.