Bavinck was born on 13 December 1854 in the town of Hoogeveen in the Netherlands to a German father, Jan Bavinck (1826–1909), who was the minister of theologically conservative, ecclesiastically separatist Christian Reformed Church (Christelijke Gereformeerde Kerk). After his high school education, Bavinck first went to the Theological School in Kampen in 1873, but then moved on to Leiden for further training after one year in Kampen. He wrote in his student journal notes that the reason made him to transfer his studies was because he was motived by the preaching of the pastor , who was also ministering in Leiden by that time. He studied under prominent faculties such as Johannes Scholten and Abraham Kuenen, and finally graduated in 1880 from the University of Leiden having completed a dissertation on the ethics of Ulrich Zwingli.