The club was established in 1888 and for over half a century played in local leagues. They won the Dereham & District League in 1949–50 and were elected to Division Two of the East Anglian League. They won the division at the first attempt, and were promoted to Division One. In 1952–53 they won the league cup. After the league merged into the Anglian Combination in 1964, Watton won the league and league cup double in 1966–67. They won the league again the following season and won the league cup for a second time in 1969–70.