In addition to his political activities, Bowdoin was active in scientific pursuits, collaborating with Benjamin Franklin in his pioneering research on electricity. He was elected a Fellow of the Royal Society of London and was elected a member of the American Philosophical Society in 1787. He was a founder and first president of the American Academy of Arts and Sciences, to whom he bequeathed his library. Bowdoin College in Maine was named in his honor after a bequest by his son James III.