Bowdoin maintained a lifelong interest in the sciences. In 1780 he was one of the founders of the American Academy of Arts and Sciences. He served as its first president until his death and left the society his library. Bowdoin published not only scientific papers, but poetry in both English and Latin. He was awarded an honorary doctorate by the University of Edinburgh and made a fellow of Harvard. His 1788 election to the Royal Society of London was the first such honor bestowed on an American after independence.