A double against Souths followed, before injury struck. Stewart only played five games overall in 2009 following a serious knee injury suffered in round six, before returning in round 25. The Sea Eagles snared fifth place at the end of the season and lost the first qualifying final to eventual grand final winners Melbourne 40–12 in a one-sided contest played at Melbourne's Etihad Stadium. Due to other unfavourable results occurring on the weekend, Manly were eliminated from the premiership race. This premiership was also stripped from the Storm.