Ljungberg missed two games against FC Dallas and Colorado Rapids due to a migraine attack. He quickly recovered to play against Chivas USA. On 30 May 2009, the Sounders drew their fifth match in a row, this time against the Columbus Crew, after Ljungberg missed a penalty kick in the 31st minute. Ljungberg scored his second goal for the season against the San Jose Earthquakes on 13 June 2009 as a result of beating Joe Cannon to the ball, lofting it over him and into the center of the net. In the 59th minute, Ljungberg's corner kick set up Montero's goal which led the Sounders to a 2–0 victory. After playing D.C. United, Ljungberg suffered from some hamstring tightness. Ljungberg did suit up for the New York Red Bulls game on 20 June 2009, but he did not play as a result of the injury. On 28 June, Ljungberg assisted Montero's 23rd-minute goal against the Colorado Rapids. He was subbed out toward the end of the game, in which he received a standing ovation. Ljungberg sat out for the US Open Cup game against the USL side Portland Timbers and focused on training during the four-week vacation in July. Following the brief holiday vacation, Seattle defeated Houston Dynamo, a game in which Ljungberg was heavily targeted and fouled. Despite this, Ljungberg outmaneuvered his opponents and assisted a goal to Patrick Ianni. As is so, the "Bleacher Report" thus dubbed him the man of the match.