In the China Open, an ATP 500 tournament held in Beijing, he drew top seeded Rafael Nadal in the first round. He pushed him hard, but was eventually defeated 6–4, 3–6, 6–4. It was Nadal's sixth straight win over the Cypriot. At the 2009 If Stockholm Open, Baghdatis reached his first ATP final since 2007 at Halle. In the opening round, he upset third seeded Juan Carlos Ferrero in straight sets 6–4, 6–2. He followed this up with crushing victories over Robert Kendrick 6–2, 6–2, and Arnaud Clément 6–4, 6–4. Top-seed Robin Söderling gave Marcos a walkover into the final. Baghdatis beat Rochus in the final 6–1, 7–5, to win just his third ATP title, which ended his two and a half year title drought.