Clegg and Beebe sold the "Territorial Enterprise" in 1961 and purchased a home in suburban San Francisco. They continued the writing, photography, and travel that had marked their lives until Beebe's death. Beebe died at the age of 63 of a sudden heart attack at his winter home in Hillsborough, California, (near San Francisco) on Friday, February 4, 1966. A memorial service was held three days later, on Monday, February 7, at 11:00 a.m. at Emmanuel Church on Newbury Street in Boston. His ashes, reportedly along with those of two of his dogs, were returned to Massachusetts and are buried in Lakeside Cemetery on North Avenue in his hometown of Wakefield, in one of the Beebe family plots, at the extreme north end of the cemetery.