Pedregon won Gibbs' first NHRA National Event as a team owner at the 1995 NHRA Chief Auto Parts Winternationals. He would couple that with a victory at the '95 NHRA U.S. Nationals, 3rd for Pedregon in 4 years at the U.S. Nationals. Pedregon continued to race for Gibbs until mid-season (Englishtown, New Jersey) in 1999. Ending with a final round appearance, Pedregon left to race on his own, and was replaced by Tommy Johnson Jr. Johnson Jr. would win his first Fuel Funny Car win with Gibbs at the '99 NHRA Keystone Nationals and would go to the next two final rounds, scoring another victory in the process. It was announced that after the '99 season, Gibbs team would be reduced to a two-car team, and the Funny Car team was parked from then on.