The genus and specific names "Liliensternus liliensterni" are derived from the last name of count, amateur paleontologist, and medical doctor, Hugo Rühle von Lilienstern. This dinosaur was named in his honor for his furthering paleontology in Germany by founding a paleontological museum in his castle in Bedheim, on 1 July 1934. "Liliensternus" was described by Friedrich von Huene in 1934. Because it was originally named by von Huene as a member of the genus "Halticosaurus", the type species of the genus "Liliensternus" is "Halticosaurus liliensterni"; the "combinatio nova" is Liliensternus liliensterni.