He began the 2002–03 in Lincoln's first team before suffering a calf strain in the 0–0 draw at Torquay United on 28 September 2002. In a bid to regain fitness Logan was loaned to former club Gainsborough Trinity in November; Trinity were then under the management of Phil Stant who had initially signed Logan for Lincoln. Logan made his debut in the 2–1 home victory over Altrincham on 9 November 2001 and remained with the club for two months before, once again, suffering a prolapsed disc in his back which required surgery and sidelined him for the remainder of the season. With his contract expiring at the end of June 2003, Logan agreed to a deal to terminate his contract two months early.