While in Deutsche Werke, "Emden" was under continuous air attacks. An air raid on 11 March set the forward deck and port side torpedo launchers on fire with incendiary bombs. Another attack on 3 April scored a direct hit on the ship's forward funnel, destroying it. On the night of 9–10 April, an Allied bombing raid severely damaged the ships in Kiel; the heavy cruisers and were both destroyed by bombs and "Emden" was slightly damaged by a near miss astern. Further, more serious damage was done on 13 April, and the next morning she was towed out into Heikendorfer Bucht. She had a 15 degree list to port, but the crew managed to stop the flooding and seal the hull. To prevent her from sinking, she was run aground in the shallows, and was decommissioned on 26 April 1945. To prevent her capture by the advancing Allied armies, her crew destroyed the ship with explosives on 3 May, five days before the end of World War II in Europe. The wreck was broken up for scrap "in situ" over the following five years. Her bow ornament is currently on display in the Deutsches Museum in Munich.