On 23 September 1993 Hooper signed for Newcastle United, who had recently been promoted to the Premier League, making his debut two days later with a clean sheet against West Ham. Again, his first team opportunities were restricted, this time by Pavel Srnicek, and he was loaned out to neighbours Sunderland in 1994–95 to gain more first team opportunities, although he did not play a first team game for them. The signing of Shaka Hislop left Hooper with little hope of even a place on the Newcastle bench during the 1995–96 season, but he remained at the club until the end of his contract in the summer of 1996 and finally left on a free transfer.