Baghdatis started the clay-court season with a first-round loss at the U.S. Clay Court Championships in Houston to Alejandro Gonzalez. After a tough period through injuries, Baghdatis opted to find his way up the rankings again through the ATP Challenger Tour. Baghdatis finished in the Top 100 for the tenth straight year with best results coming at Challenger level (22–2 record), winning four titles: Nottingham (d. Matosevic) in June, back-to-back in Vancouver (d. Dustov) and Aptos (d. Kukushkin) in August and Geneva (d. Przysiezny) in November.