Cobra Commander takes back complete control of Cobra, and sends a unit to destroy The Pit, as Cobra discovers a weather control weapon named the Tempest, and moves it to their new Monolith Base in Badhikstan. Cobra uses the Tempest to unleash the Deathangel Virus on the county of Badhi, as G.I. Joe attacks Cobra's new stronghold. Cobra Commander escapes, but not before shooting Dr. Mindbender, who dies helping G.I. Joe to disable the Tempest. The Red Shadows organization then steps forward, targeting members of both G.I. Joe and Cobra. They are defeated by G.I. Joe, and the team is then deactivated by order of the President, given that Cobra as an organization has fractured, although Cobra Commander remains at large.