On April 18 2018, Bautista signed a minor league contract with the Atlanta Braves. After playing a few games for the Gwinnett Stripers, the Braves promoted Bautista to start at third base for the first of a three-game series against the San Francisco Giants on May 4. On May 12, 2018, Bautista hit his first home run with the Braves. Bautista batted .143 with two home runs and five RBIs in 35 at bats over 12 games played before being released by the Braves on May 20.