2006 saw Batley start the campaign with little promise after a series of dismal performances in the Northern Rail Cup and the early rounds of National League One. However, coach Gary Thornton turned the side round and Batley made their way into the end of season play-offs. Jay Duffy's late drop goal sealed a 23–22 victory at Leigh to end the Lancastrians' own hopes of promotion and ultimately earn Thornton the honour of National League coach of the year. Batley failed to replicate this success in the next round, crashing to a 30–0 defeat at Whitehaven to put an abrupt end to their season.