The Jacksonville Jaguars selected Scobee with the 137th overall pick in the fifth round of the 2004 NFL Draft. In the 2004 season, he led the team with 93 points after connecting with 24-of-31 field goals and 20-of-21 of his extra points. In addition, he ranked 13th in the AFC in field goal percentage and tied for third on touchbacks with 11 on 58 kickoffs. During his first five NFL seasons, he was named AFC Special Teams Player of the Week four times.