Scharner played nine league games for Austria Wien the next season, scoring one goal and receiving three yellow cards until September, as well as competing in the UEFA Champions League qualification against Olympique Marseille, losing the home game and tying in the away game, which led to an UEFA Cup match against Borussia Dortmund, which was also lost. He was kicked from the team in mid October, after then-coach Joachim Löw intended to substitute him as a right midfielder, a position he did not like to play. After refusing his substitution and later stating: "The coach and I discussed where I can help the team the most, but the coach always uses me elsewhere. I already played on seven different positions. But I'm continuing my path." he was suspended from Austria and was forced to look for a new team.