In Congress, Morris aligned with the less radical faction of delegates that protested British policies but continued to favor reconciliation with Britain. He was appointed to the Secret Committee of Trade, which supervised the procurement of arms and ammunition. As the revolutionary government lacked an executive branch or a civil service, the committees of Congress handled all government business. Biographer Charles Rappleye writes that the committee "handled its contracts in a clubby, often incestuous manner" that may have unfairly benefited politically connected merchants, including Morris. However, Rappleye also notes that the dangerous and secretive nature of a committee charged with obtaining contraband goods made it difficult for the committee to establish competitive bidding procedures for procurement contracts. In addition to his service on the Secret Committee of Trade, Morris was also appointed to the Marine Committee, which oversaw the Continental Navy, and the Committee of Secret Correspondence, which oversaw efforts to establish relations with foreign powers. From his position on the latter committee, Morris helped arrange for the appointment of Silas Deane as Congress's representative to France; Deane was charged with procuring supplies and securing a formal alliance with France.