In 1999 Huracán was relegated to B Nacional again, although the club would be promoted one season later, coached by Babington again. A new crisis due to internal and financial problems led to relegation in 2003. The club spent four seasons in the B Nacional until 2007, when the club promoted to Primera after defeating Godoy Cruz in playoffs with scores of 2–0 in Parque Patricios and 3–2 in Mendoza. Huracán was coached by Antonio Mohamed, who had won a promotion as player some years earlier.