Milton signed a minor league contract with the Los Angeles Dodgers on February 10, 2009 with an invitation to spring training. He did not make the Major League team and was assigned to the AAA Albuquerque Isotopes to open the season. In 7 starts with the Isotopes, Milton was 3–2 with a 2.83 ERA. His contract was purchased by the Dodgers on May 14 and on May 16, Milton made his first appearance in the Major leagues since 2007 when he started for the Dodgers against the Florida Marlins.