Set to become an unrestricted free agent on July 1, 2009, Rypien re-signed to a two-year deal with the Canucks on May 27. Rypien continued to play on the Canucks' fourth line in 2009–10. During a game against the St. Louis Blues on December 31, 2009, he was automatically ejected after a fight with opponent Cam Janssen revealed his hands were illegally taped below the wrist to support a sprained finger. Avoiding major injury for the first time in his NHL career, he recorded career-highs of 8 points (4 goals and 4 assists) in 69 games.