He soon returned to his Coleman Street congregation, though not to the emoluments of St. Stephen's, of which he was deprived and Theophilus Alford admitted as his successor, on 29 May 1661. He had written strenuously against the Fifth-monarchy men in 1654 and 1655; but Thomas Venner's meeting house, from which Venner's Rising proceeded, was in Swan Alley, Coleman Street, and here also, in 1653, was Goodwin's study. This may explain why Burnet wrote that Goodwin was one of these enthusiasts. Immediately on Venner's rising, Goodwin's church issued a "Declaration" (January 1661) disclaiming all sympathy with this or any attempt 'to propagate religion by the sword.'