The 2012 season did start on a somewhat sour note for the Flash having been eliminated from the US Open Cup by their crosstown rival San Diego Boca FC. However, the Flash's second campaign in the NPSL ended up proving just as successful as the first with the team going 11–2–1 with a 13-game unbeaten streak, including having gone unbeaten at home, that was not ended until the last game of the season. For their second NPSL year the team moved from Westview High School to the stadium at Del Norte High School near Poway. The Flash developed several players over the course of the season who earned trials with the San Jose Earthquakes of Major League Soccer. Near the end of the season the team itself enjoyed its two largest home crowds to that point and also began exploring the possibility of moving to the Division 2 North American Soccer League with Alexander presenting a letter to and meeting with the NASL. The team did suffer from a second consecutive early exit from the playoffs in the divisional semi-final losing to the Sonoma County Sol on penalty kicks 5–3 after the game ending in a 2–2 draw.