The following season saw Marlow reach the third round of the FA Cup after beating Salisbury and VS Rugby in the first two rounds. They were drawn at home to Tottenham, but the match was switched to White Hart Lane, where they lost 5–1. Two seasons later they reached the third round again, defeating Oxford United in the first round, before losing 2–0 at Swindon Town in the third. The club remained in the Isthmian League's Premier Division until being relegated at the end of the 1994–95 season. Two seasons later they were relegated again. In 2004 they were transferred to Division One West of the Southern League, and were later transferred to Division One Central. In 2011–12 the club finish bottom of Division One Central of the Southern League were relegated to the Premier Division of the Hellenic League.