In the story arc, Boba infiltrates Mace Windu's flagship in the guise of a clone trooper cadet, hoping to exact revenge against the Jedi for killing his father. After a failed attempt to bomb Windu in his quarters, he sabotages the ship's engines, causing it to crash on a nearby planet. He and his bounty hunter accomplices then take hostages from the ship's crew, whom they try to use to bait the Jedi Master. Throughout the ordeal, Fett balks at committing violence against his fellow clones, which comes to a head when his mentor Aurra Sing executes Windu's clone trooper second-in-command. Plo Koon and Ahsoka Tano eventually track Fett and his compatriots to pirate Hondo Ohnaka's base. Fett is ultimately captured by the Jedi and sentenced to prison on Coruscant; although he expresses regret for the collateral damage he has caused, he vows to never forgive Windu.