Scot made his own will (drawing it with his own hand) on 15 September 1599. He died at Smeeth on 9 October following, and was probably buried in the church of St. Mary the Virgin, Brabourne, with his first wife Jane. His small properties about Brabourne, Aldington, and Romney Marsh he left to his widow. The last words of his will run: "Great is the trouble my poor wife hath had with me, and small is the comfort she hath received at my hands, whom if I had not matched withal I had not died worth one groat."