In terms of architectural design, the Church of the Holy Archangels Michael and Gabriel follows the Byzantine cross-in-square plan. The church measures or , and its walls are from to thick. It has a single nave topped by a dome and two arches along the length of the dome. The church has three apses, each with a window. The three-walled central apse is the largest and the two side apses merge into its sides. Two pillars aligned with the points where the side apses merges into the main apse divide the altar into a prothesis and a diaconicon.