When Selene attempted to rise to goddesshood, it was revealed that Shinobi was at some point found and killed by his father, as he was resurrected by Selene with the techno-organic virus and sent with Harry Leland to kill his father and Donald Pierce. Selene was ultimately defeated and Shinobi's fate was left uncertain, as it was unknown if he was among the mutants teleported to Genosha by Blink to serve as a sacrifice to Selene or if he was among those that managed to escape Utopia.