The first documented reference to Warburton occurs in the Domesday Book, where the two manors of Warburton were recorded; the manors were united by the late 12th century. Before the Norman conquest, the area was controlled by the Anglo-Saxon thegn Aelfward. Although the Domesday Book records no church in Warburton, it is possible that the church dedicated to Saint Werburgh is pre-Conquest. The omission of the church may not be significant, as not all pre-Conquest churches or chapels were recorded in the Domesday survey. The first documented evidence of a church in Warburton was in a deed of 1187, when it was a chapel of ease for the parish of Lymm. Warburton became a separate parish in the 13th century. The church is surrounded by a ditch and bank, probably dating to at least the 14th century. Warburton is also the site of a medieval priory, near the Church of St Werburgh; although the priory was only formed in the 13th century, it was dissolved in 1270.