Throughout its length, the Jefferson River is used extensively as a source of irrigation water for local farms and ranches. Dams constructed upstream on the Ruby and Beaverhead rivers store surplus water from spring runoff which is released to augment natural flows during the summer irrigation season. However, portions of the river can become severely dewatered, shallow, and warm in drought years, adversely impacting fish populations. The unnaturally warm water, combined with excess nutrients from irrigation runoff and grazing practices, can stimulate rapid growth of algae in mid-summer, to the detriment of anglers and floaters.