From January 2009 to 2011, Kelly was National Public Radio's senior Pentagon correspondent, reporting on defense and foreign policy issues. As part of NPR's national security team, Kelly covered the Obama administration's approach to the wars in Afghanistan and the Iraq War. She also focused on how the U.S. projected its military power elsewhere in the world; how the U.S. reacted to, and dealt with, the emerging global military muscle of countries such as China; and the way in which U.S. foreign policy goals are often sought, and sometimes achieved, through defense and Intelligence agency channels.