In summer 1997, local junior football club Holyhead Peibio Youth amalgamated with Holyhead Hotspur and formed the club's junior branch. Now known as Holyhead Hotspur Peibio Youth, the juniors are represented at Under 7, Under 9, Under 11, Under 12, Under 14, Under 16 and Under 18 age groups. Holyhead Hotspur Peibio Youth was the first organisation in the whole of Wales to receive the Welsh Football Trust's Fun Football Accreditation, allowing the Club to host regular soccer school activities as well as football in the community programme, involving a newly formed ladies team (Cybi Ladies) and a learning difficulties team (Clwb Cybi). In 2009 they were one of only four clubs on Anglesey to be awarded silver accreditation by McDonald's and the Football Association of Wales. Silver accreditation was retained for the 2010–11 season.