"1999" was re-released in the UK and the US in late 1998 to accompany the song's namesake year. It was released on 12" vinyl with the same track listing as the original 12" single: the album version, along with "How Come U Don't Call Me Anymore?" and "D.M.S.R." A CD single was also issued with the same track listing, except the edit of "1999" was substituted for the album version. It was also re-released again towards the end of its namesake year. The original version re-charted within the Top 40 on the US "Billboard" Hot 100 in December 1998, becoming Prince's last top 40 hit before his death in 2016.