The squadron played a role in the Battle for Mon Calamari during Admiral Daala's campaign against the New Republic. Around this time, former squadron leader Luke Skywalker was teaching his first class of Jedi Knights, including Rogue Squadron member Corran Horn. The squadron was led by Tycho Celchu after the campaign against Krennel, and was then led by Gavin Darklighter during the Yuuzhan Vong War. Later on during a brewing civil war within the Republic, the squadron would temporarily be led by Jaina Solo.