Since Janson and Klivian moved on to train new pilots and squadrons, Antilles had to reinvent Rogue Squadron, now with pilots from a wide variety of planets, clearly for political reasons. This "new" Rogue Squadron destroyed some of the Imperial forces led by Ysanne Isard and contributed heavily to the retaking of Coruscant. After resigning from the Alliance military, the squadron fought in the Bacta War to retake the world of Thyferra from Isard. During that time, Klivian led a temporary Rogue Squadron in the absence of the "true" Rogue Squadron. Upon their return from Thyferra, Antilles turned command over to Tycho Celchu and founded Wraith Squadron. Antilles commanded both squadrons against Warlord Zsinj and after that he returned to his command as Rogue Leader to battle against Thrawn, Krennel, Palpatine's clones and lead the team to other battles.