Clopton rebuilt the nave of the Chapel of the Stratford Guild of the Holy Trinity, situated opposite his new house in Chapel Street, and he adorned the building with a tower, steeple, glass windows and paintings for the ceiling. He also built the Clopton Bridge, a remarkably fine stone bridge of fourteen arches over the River Avon, having removed at his own expense an old wooden bridge on the site. He also founded the Clopton chantry chapel in the Church of the Holy Trinity, Stratford-upon-Avon, still notable features of modern Stratford.