Boavista finished 8th in the 2001–02 season with 18 points, 4 wins and 7 draws and losses, they scored 16 goals which the least to date for the club and conceded 21 goals to other Santiago South clubs, the 2001–02 season was the last time they finished below the 6th-place position at the regionals. In 2003, Boavista did better with 35 points, but failed to enter the national championships as they finished 2nd place behind CD Travadores. Their positions waned to 3rd in 2004 but scored 35 goals that season, and 6th in 2005, their last under the 5th position at the regionals, the club also done the most draws to date numbering eight. 23 points they had for the next two seasons. Boavista's success did better for 2006 as they had 6 wins and 5 draws and 22 goals scored, Boavista finished fourth for the next two seasons. In 2007, Boavista had 6 draws and 28 goals scored in Santiago South and had 30 points. Boavista had 8 wins for the next two seasons. In 2008, they scored better with 23 goals. In 2009, Boavista finished third with 37 points, it was their club record.