Protoavis are well preserved, and they are astonishingly non-avian. The distal carpals, while long, are in no way similar to those observed in the urvogel or other archaic birds. There is no semilunate element, and the structure of the radiale and ulnare would have limited the flexibility of the wrist joint. The manus is not tridactyl, and metacarpal V is present. In even the most basal avialian, "Archaeopteryx", there is no vestige of the fifth metacarpal and its presence in "Protoavis" seems incongruous with the claim that it is a bird, let alone one more derived than "Archaeopteryx". Chatterjee claims that
Specimens of Archaeopteryx — limiting its ability to perch on branches and implying a terrestrial or trunk-climbing lifestyle. This has been interpreted as evidence of theropod ancestry. In 1988, Gregory S. Paul claimed to have found evidence of a hyperextensible second toe, but this was not verified and accepted by other scientists until the Thermopolis specimen was described. "Until now, the feature was thought to belong only to the species' close relatives, the deinonychosaurs." The Thermopolis Specimen was assigned to "Archaeopteryx siemensii" in 2007. The specimen is considered the most complete and well preserved "Archaeopteryx" remains yet. This specimen first came to light