Comet Shoemaker–Levy 9 A of the nucleus entered Jupiter's southern hemisphere at a speed of about . Instruments on "Galileo" detected a fireball that reached a peak temperature of about , compared to the typical Jovian cloudtop temperature of about , before expanding and cooling rapidly to about after 40 seconds. The plume from the fireball quickly reached a height of over . A few minutes after the impact fireball was detected, "Galileo" measured renewed heating, probably due to ejected material falling back onto the planet. Earth-based observers detected the fireball rising over the limb of the planet shortly after the initial impact.
Comet Shoemaker–Levy 9 carbon disulfide persisted in the atmosphere for at least fourteen months after the collisions, with a considerable amount of ammonia being present in the stratosphere as opposed to its normal location in the troposphere. Counterintuitively, the atmospheric temperature dropped to normal levels much more quickly at the larger impact sites than at the smaller sites: at the larger impact sites, temperatures were elevated over a region wide, but dropped back to normal levels within a week of the impact. At smaller sites, temperatures higher than the surroundings persisted for almost two weeks. Global stratospheric temperatures rose immediately after the impacts,