Opsin three domains of life: Archaea, Bacteria, and Eukaryota. In Eukaryota, type I opsins are found mainly in unicellular organisms such as green algae, and in fungi. In most complex multicellular eukaryotes, type I opsins have been replaced with other light-sensitive molecules such as cryptochrome and phytochrome in plants, and type II opsins in Metazoa (animals). Microbial opsins are often known by the rhodopsin form of the molecule, i.e., rhodopsin (in the broad sense) = opsin + chromophore. Among the many kinds of microbial opsins are the proton pumps bacteriorhodopsin (BR) and xanthorhodopsin (xR), the chloride pump halorhodopsin (HR) the photosensors
Symbiotic bacteria contain fiber. They also help produce vitamins. Symbiotic bacteria can live near hydrothermal vents. They usually have a mutual relationship with other bacteria. Some live in tube worms. Corals have been found to form characteristic associations with symbiotic nitrogen-fixing bacteria. Corals have evolved in oligotrophic waters which are typically poor in nitrogen. Corals must therefore form a mutualistic relationship with nitrogen fixing organism, in this case the subject of this study, namely Symbiodinium. In addition to this dinoflagellate, coral also form relationships with bacteria, archae and fungi. The problem is that these dinoflagellates are also nitrogen limited and must form