Polyculture chemicals into the environment such as eutrophication of fresh water or the presence of excess atmospheric nitrogen are greatly reduced in polycultures. Other negative impacts of modern agriculture are similarly reduced. Excessive tillage occurs in most modern agricultural practices, but removes essential microbes and nutrients from the soil that are conserved in polycultures, especially permacultures. Agricultural machinery not only uses fossil fuels and creates waste, but is more costly to farmers. Because polyculture relies on natural systems of crop maintenance these costs can be eliminated as well. Modern agriculture is also dependent on a very limited number of plant species.
Eutrophication especially immobile bottom dwellers die off. In extreme cases, anaerobic conditions ensue, promoting growth of bacteria such as "Clostridium botulinum" that produces toxins deadly to birds and mammals. Zones where this occurs are known as dead zones. Eutrophication may cause competitive release by making abundant a normally limiting nutrient. This process causes shifts in the species composition of ecosystems. For instance, an increase in nitrogen might allow new, competitive species to invade and out-compete original inhabitant species. This has been shown to occur in New England salt marshes. In Europe and Asia, the common carp frequently lives in naturally Eutrophic