Platonic solid the inradius "r". That is, The following table lists the various radii of the Platonic solids together with their surface area and volume. The overall size is fixed by taking the edge length, "a", to be equal to 2. The constants "φ" and "ξ" in the above are given by Among the Platonic solids, either the dodecahedron or the icosahedron may be seen as the best approximation to the sphere. The icosahedron has the largest number of faces and the largest dihedral angle, it hugs its inscribed sphere the most tightly, and its surface area to volume ratio is closest
Volume Area Dihedral Angle Reporter is calculated by dividing a given residue’s observed accessible surface areas by the calculated accessible surface areas for that residue in an extended Gly-Xaa-Gly tripeptide (where Xaa is the residue of interest). VADAR reports accessible surface are values both for the entire amino acid residue and for the amino acid side chains. The accessible surface areas is also calculated for charged atoms (N, O), polar (N, O, S) atoms and for non-polar atoms (C). This information can be used to calculate charged, polar and non-polar surface area. Accessible surface areas measurements/estimates are particularly useful in protein structure assessment, protein structure