Apo Reef two lagoon systems, the north and south lagoons which are bounded by narrow reef platforms. It is a almost triangular northern and southern atoll-like reefs separated by a deep channel that is open to the west. The channel runs east to west from deep with a fine white sand bottom, numerous mounds and patches of branching corals under the deep blue water. The north lagoon is an enclosed triangular coral reef platform partly exposed during low tide. It is relatively shallow with depths of about . While the south lagoon is an inverted triangular coral platform enclosed on two sides
Open brain coral lobed. They typically have bilateral symmetry. During the day when the polyp is closed, the coral is covered by a mantle that extends beyond the skeleton, but can retract when disturbed. Polyps and mantle are very fleshy. Colonies can be blue, green, yellow, brown, and are often vibrantly colored. The open brain coral is known to host a species of gall crab, "Lithoscaptus" "semperi." Open brain corals can be found throughout the Indo-Pacific, from the Red Sea to New Caledonia. They are found up to a maximum depth of 40 meters. Open brain corals are less common directly in coral