Apo Reef two lagoon systems, the north and south lagoons which are bounded by narrow reef platforms. It is a almost triangular northern and southern atoll-like reefs separated by a deep channel that is open to the west. The channel runs east to west from deep with a fine white sand bottom, numerous mounds and patches of branching corals under the deep blue water. The north lagoon is an enclosed triangular coral reef platform partly exposed during low tide. It is relatively shallow with depths of about . While the south lagoon is an inverted triangular coral platform enclosed on two sides
Coral reef protection due to their location out in open water; there is no distinct ownership over certain parts of the ocean, which creates difficulty in delegating responsibility. But private and government groups whose purpose is to help the environment have made steps towards the restoration of coral reefs. The aim of coral restoration is to help coral adapt to stressors and changing environments. NOAA's Coral Reef Conservation Program and Damage Assessment, Remediation and Restoration Program approaches restoration by responding to and restoring physically damaged reefs, preventing the loss of habitat, implementing coral conservation projects, focusing on restoring endangered coral species and controlling