Lake Onega water per year, of which 46% are industrial and household water, 25% is stormwater runoff and 16% is melioration-related drainage. This drainage contains of phosphorus and of nitrogen; respectively of these elements are removed through the River Svir whereas the rest accumulates in the lake. Ships and motor boats (about 8,000 units) bring oil pollution at the level of about per navigation year, as well as phenols (), lead () and oxides of sulfur, nitrogen, and carbon. The lake basin is a major source of granite, marble and black schist in Russia which have been exploited in the area since
Lake Onega is relatively cold, with temperatures below for half of the year and average summer temperatures of about . The catchment area of drains into the lake via 58 rivers and more than 110 tributaries, including the Shuya, Suna, Vodla, Vytegra and Andoma. The only outgoing River Svir, which marks the southern boundary of Karelia, runs from the southwestern shore of Lake Onega to Lake Ladoga and continues as the Neva River to the Gulf of Finland. The White Sea–Baltic Canal runs through the lake from the White Sea to the Baltic Sea. The Volga–Baltic Waterway connects Onega Lake with the