Kenny Shiels in May 2007, as their head of youth. He left Tranmere in June 2010 to become assistant manager at Kilmarnock, following his three-year stint at the club. After Mixu Paatelainen left Kilmarnock to become manager of the Finland national football team, Shiels became caretaker manager. His first game in charge was a goalless draw with St Johnstone on 2 April 2011. On 15 June 2011, he became manager of Kilmarnock on a permanent basis and upon being manager, he soon added Jimmy Nicholl as his assistant manager, who just quit Cowdenbeath. He helped Kilmarnock achieve their first home win against
Kenny Shiels lost consecutive matches to Limavady United in the Gold Cup and Linfield in the league, causing Shiels to tender his resignation. According to the official club website Shiels was manager of Moyola Park from January 1999 to December 2000, although these dates overlap in part with his time at Coleraine. Nonetheless Shiels was in charge of the club and even signed a youthful Ivan Sproule for them. Shiels next appointment was at Ballymena United, where he was confirmed in the managerial chair on 2 January 2001. The club were battling relegation and ultimately Shiels was unable to prevent the club