Lake Onega water per year, of which 46% are industrial and household water, 25% is stormwater runoff and 16% is melioration-related drainage. This drainage contains of phosphorus and of nitrogen; respectively of these elements are removed through the River Svir whereas the rest accumulates in the lake. Ships and motor boats (about 8,000 units) bring oil pollution at the level of about per navigation year, as well as phenols (), lead () and oxides of sulfur, nitrogen, and carbon. The lake basin is a major source of granite, marble and black schist in Russia which have been exploited in the area since
Onega River traditionally explained as related to Finnish "Enojoki" - the main river, stream. In terms of both area of the basin and the average discharge, the Onega is the third river basin of the White Sea (behind the Northern Dvina and the Mezen. The river basin of the Onega is spread over the west of Arkhangelsk Oblast, north-west of Vologda Oblast, and also includes minor areas in the east of Republic of Karelia. The Onega basin includes some of the biggest lakes of Arkhangelsk and Vologda Oblasts, such as Lake Vozhe, Lake Lacha, Lake Lyokshmozero, Lake Kenozero, Lake Undozero, and Lake