Greater scaup faces numerous threats, the most significant challenge to their survival is habitat degradation caused by a mix of human development and runoff. Greater scaup, when moulting and during the winter, are threatened by escalated levels of organochloride contaminants. Oil and sewage pollution also threaten this duck. Since 80% of the greater scaup population winters in the urbanized part of the Atlantic Flyway, these ducks are subject to high levels of organic contaminates, along with increased levels of heavy metals in foods and habitat. A joint group of American and Canadian scientists researching scaup migration across the Great Lakes found that
Lesser scaup but only really numerous after September. They move north again in April and May. In the extreme southeast and southwest of the breeding range—the Rocky Mountains region of the northwestern United States and the southern Great Lakes—lesser scaup are present all-year; it is not clear whether the breeding birds are replaced by migrants from the far north in winter, or whether the local populations do not migrate, or whether both local and migrant birds are found there in winter. They are rarely—but apparently increasingly often—seen as vagrants in western Europe. The first documented British record was a first-winter male at