Greater scaup faces numerous threats, the most significant challenge to their survival is habitat degradation caused by a mix of human development and runoff. Greater scaup, when moulting and during the winter, are threatened by escalated levels of organochloride contaminants. Oil and sewage pollution also threaten this duck. Since 80% of the greater scaup population winters in the urbanized part of the Atlantic Flyway, these ducks are subject to high levels of organic contaminates, along with increased levels of heavy metals in foods and habitat. A joint group of American and Canadian scientists researching scaup migration across the Great Lakes found that
Lesser scaup where the white extends to the eye region. But especially with juveniles, the bi-colored bill of hybrids is most diagnostic. Hybrid combinations that are known from the wild and resemble the lesser scaup are: In theory, each and every "Aythya" species is able to produce potentially fertile hybrids with any other, though due to their different ranges and behavioral cues given during courtship most of these hybrids are only known from birds kept in captivity without conspecific mates. Their breeding habitat is inland lakes and marsh ponds in tundra from Alaska through western Canada to western Montana; few breed east