Greater scaup faces numerous threats, the most significant challenge to their survival is habitat degradation caused by a mix of human development and runoff. Greater scaup, when moulting and during the winter, are threatened by escalated levels of organochloride contaminants. Oil and sewage pollution also threaten this duck. Since 80% of the greater scaup population winters in the urbanized part of the Atlantic Flyway, these ducks are subject to high levels of organic contaminates, along with increased levels of heavy metals in foods and habitat. A joint group of American and Canadian scientists researching scaup migration across the Great Lakes found that
Lesser scaup alone. The nest is a shallow depression scraped in the ground and lined with plants and some down feathers. Breeding begins in May, but most birds nest only in June, later than usual for North American waterfowl. The clutch numbers about 9–11 eggs on average; up to 26 eggs have been found in a single nest, but such high numbers are from more than one female. Incubation is by the female only and lasts around 3 weeks. The young fledge some 45–50 days after hatching and soon thereafter the birds migrate to winter quarters already. Lesser scaup become sexually mature