Wookey Hole Caves then passes through major cave systems such as Swildon's Hole, Eastwater Cavern and St Cuthbert's Swallet, around Priddy, but 95% is water that has percolated directly into the limestone. The southern slopes of the Mendip Hills largely follow the flanks of an anticline, a fold in the rock that is convex upwards and has its oldest beds at its core. On the Mendips the crest of the anticline is truncated by erosion, forming a plateau. The rock strata here dip 10–15 degrees to the southwest. The outer slopes are mainly of Carboniferous Limestone, with Devonian age Old Red Sandstone exposed
Wookey Hole Caves system that is formed within the Dolomitic Conglomerate is characterised by shallow loops linking low bedding chambers, or tall narrow passages, known as 'rifts', developed by phreatic solutional enlargement of fractured rifts. The streamway in the inner part of the system formed within the limestone is characterised by deep phreatic loops reaching depths as much as , with the water flowing down-dip along bedding planes and rising up enlarged joints. In the far reaches of the cave the passages descend to below sea level. Witcombe suggests that the name "Wookey" is derived from the Celtic (Welsh) for 'cave', ""Ogo"" or