Vibration theory of olfaction have a vibrational energy mode compatible with the difference in energies between two energy levels on the receptor, so electrons can travel through the molecule via inelastic electron tunneling, triggering the signal transduction pathway. The vibration theory is discussed in a popular but controversial book by Chandler Burr. The odor character is encoded in the ratio of activities of receptors tuned to different vibration frequencies, in the same way that color is encoded in the ratio of activities of cone cell receptors tuned to different frequencies of light. An important difference, though, is that the odorant has to be able
Molecular vibration each of the four C-H bonds. Illustrations of symmetry-adapted coordinates for most small molecules can be found in Nakamoto. The normal coordinates, denoted as "Q", refer to the positions of atoms away from their equilibrium positions, with respect to a normal mode of vibration. Each normal mode is assigned a single normal coordinate, and so the normal coordinate refers to the "progress" along that normal mode at any given time. Formally, normal modes are determined by solving a secular determinant, and then the normal coordinates (over the normal modes) can be expressed as a summation over the cartesian coordinates (over