Biomolecular structure chemical probing, hydroxyl radical probing, nucleotide analog interference mapping (NAIM), and in-line probing. Protein and nucleic acid structures can be determined using either nuclear magnetic resonance spectroscopy (NMR) or X-ray crystallography or single-particle cryo electron microscopy (cryoEM). The first published reports for DNA (by Rosalind Franklin and Raymond Gosling in 1953) of A-DNA X-ray diffraction patterns—and also B-DNA—used analyses based on Patterson function transforms that provided only a limited amount of structural information for oriented fibers of DNA isolated from calf thymus. An alternate analysis was then proposed by Wilkins et al. in 1953 for B-DNA X-ray diffraction and scattering
DNA supercoil points for replication or gene expression. This implies that it is a very dynamic process in which both DNA and proteins each influences how the other acts and reacts. In nature, circular DNA is always isolated as a higher-order helix-upon-a-helix, known as a "superhelix." In discussions of this subject, the Watson-Crick twist is referred to as a "secondary" winding, and the superhelices as a "tertiary" winding. The sketch at right indicates a "relaxed", or "open circular" Watson-Crick double-helix, and, next to it, a right-handed superhelix. The "relaxed" structure on the left is not found unless the chromosome is nicked; the