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Best Answer: A little mucus in stool is normal. My son had the same problems. It turned out to be a mild allergy to dogs. What happens, is because babies are too young to blow their nose, they end up swallowing a lot of mucus, and it doesn't all digest. Thus a mucus diaper. They do look like what comes out of your nose.he doctor noticed he had mucus in his stool. I watched what I eat then started eliminating some items and we are having an allergy test next week. The doctor said that if it is negative we need to see a specialist. The thing is I am not sure that what I see is mucus.
A small amount of mucus in stool is usually nothing to worry about. Stool normally contains a small amount of mucus â a jelly-like substance that your intestines make to keep the lining of your colon moist and lubricated.arger amounts of mucus in stool, associated with diarrhea, may be caused by certain intestinal infections. Bloody mucus in stool, or mucus accompanied by abdominal pain, can represent more serious conditions â Crohn's disease, ulcerative colitis and even cancer. With. John M. Wilkinson, M.D.