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Quick Answer. Hiccups resulting from surgery may be caused by a reaction to anesthesia or happen as a result of abdominal surgery or medical procedures such as a tracheotomy, states Healthline. Using a catheter to access the heart, bronchoscopy or using a stent in the esophagus can also result in long-term hiccups.
The most common cause of long-term hiccups is damage to or irritation of the vagus nerves or phrenic nerves, which serve the diaphragm muscle.Factors that may cause damage or irritation to these nerves include: 1  A hair or something else in your ear touching your eardrum.  A tumor, cyst or goiter in your neck.