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Some causes of slightly lower-than-usual body temperature include infections, heavy alcohol use, and hypothyroidism. Occasional low temperatures are common since body temperature changes throughout the day, the Mayo Clinic says.
Low body temperature causes may be: 1  Hypothyroidism caused by iodine deficiency. 2  Diabetes. 3  Liver or kidney failure. 4  Infection such as candida albecans, parasites and worms. 5  Endocrine dysfunction/hormone imbalance. 6  Side effects of medications such as sedatives, tranquilizers, heart medication. 7  Alcohol/drug abuse. 8  Hypoglycemia.