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Corruption. In MySQL if a database (more likely a few tables) become corrupt, you can repair them individually. In MongoDB, you have to repair on a database level. There is a command to do this but it reads all the data and re-writes it to a new set of files.
MongoDB stores data as documents in a binary representation called BSON (Binary JSON). Documents that share a similar structure are typically organized as collections. You can think of collections as being analogous to a table in a relational database: documents are similar to rows, and fields are similar to columns.