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Three types of gut microbiota. The types of gut microbiota (called enterotypes) can be classified into three large, clearly distinguishable groups: Bacteroides, Prevotella and Ruminococcus. They are named for the bacteria that dominate the intestines of the respective groups.The three gut types can explain why the uptake of medicines and nutrients varies from person to person,â says bioinformatician Jeroen Raes of the VIB and Vrije Universiteit Brussel, one of the two lead researchers in the study.
In general, there are five types of microbes: 1  cellulolytic bacteria: digest fiber. 2  proteolytic bacteria: break down protein. 3  lactic acid-producing bacteria: digest starch. 4  protozoa: produce volatile fatty acids. 5  fungi/yeasts: break down fiber. 6  other bacteria: produce B-vitamins.he products of forage digestion are volatile fatty acids, which horses use for energy. Humans have some microbes that should stay in balance as well, although they pale in number and function compared to those of herbivores.