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1 If the liver is unable to break down the ammonia it is excreted in the urine.  Other diseases - Other common causes of the ammonia smell in urine are diabetes, metabolic disorders, sexually transmitted diseases, medications, vitamins, and nutritional supplements.
Normal urine is clear and has a straw-yellow color. While the odor of urine can vary somewhat, in most cases, it does not have a strong smell. With dehydration, the urine is more concentrated and may have a stronger ammonia scent than normal. Consumption of certain foods, such as asparagus (which can impart a characteristic odor to urine), and taking some medications may be causes for changes in the odor of urine. The presence of bacteria in the urine, such as with a urinary tract infection (UTI), can affect the appearance and smell of urine. When there is an infection in the urinary tract, the urine may take on a foul-smelling odor as well as appear cloudy or bloody.