Therefore, the. extension of the Gillespie algorithm to account for volume. growth is an important and necessary developmental step. Here we extend the Gillespie simulation routine to account. for the deterministic time dependence of rate constants. arising from cellular growth and division.
Simulation of Newton's Cradle, a device consisting of several steel balls suspended from a cage. Uses the 2D Rigid Body Physics Engine. Each ball acts like an individual pendulum. At rest all the balls are touching.
Hidden Markov Models (HMMs). A hidden Markov model models a Markov process, but assumes that there is uncertainty in what state the system is in at any given time. A common metaphor is to think of the HMM as if the Markov Model were a mechanism hidden behind a curtain.