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â¢ Mitochondrial DNA is found inside the mitochondria while nuclear DNA is found inside the nucleus of a cell. â¢ One cell contains approximately 99.75% of nuclear DNA and 0.25% of mitochondrial DNA.â¢ The mutation rate of mitochondrial DNA is nearly twenty times faster than that of nuclear DNA.he uniqueness of mitochondrial DNA is that it is maternally inherited as a linked set of genes, passed on to progeny in the cytoplasm of the egg cell; thus no recombination between maternal and paternal genomes occurs.
Membrane. Mitochondria and chloroplasts are enveloped in two membranes, while bacteria only have one. The inner membrane of mitochondria and chloroplasts resembles the bacterial membrane, while the outer membrane is thought to be part of the original host cell membrane.his process of replication is called binary fission and also occurs in bacteria. Replication by mitochondria and chloroplasts is independent of the host cell's replication cycle. Plant and animal cells replicate by a complex process called mitosis or meiosis.