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A: The enzymes that break down protein include trypsin, chymotrypsin, pepsin, thermolysin, glutamyl endopeptidase, elastase, bromelain and papain. Trypsin, pepsin, elastase, thermolysin, glutamyl, endopeptidase and chymotrypsin are made in the human body. Bromelain comes from pineapples and papain comes from papayas.
All enzymes themselves are proteins that consist of amino acids just like all other proteins. Enzymes That Work on Specific Food Types or Compounds. Specific enzymes work on specific foods. You need the right type of enzyme for the foods you want it to break down. Think of the foods you have problems with and then choose a product that contains at least those types of enzymes. Here is a list of the common enzyme types and foods they act on. Digestive enzymes are enzymes that break down food into usable material.