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A: The enzymes that break down protein include trypsin, chymotrypsin, pepsin, thermolysin, glutamyl endopeptidase, elastase, bromelain and papain. Trypsin, pepsin, elastase, thermolysin, glutamyl, endopeptidase and chymotrypsin are made in the human body. Bromelain comes from pineapples and papain comes from papayas.
Protease. Any enzyme that breaks down protein into its building blocks, amino acids, is called a protease, which is a general term. Your digestive tract produces a number of these enzymes, but the three main proteases are pepsin, trypsin and chymotrypsin.ipase. Lipase is an enzyme that breaks down dietary fats into smaller molecules called fatty acids and glycerol. A small amount of lipase, called gastric lipase, is made by cells in your stomach. This enzyme specifically digests butter fat in your food.