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Best Answer: follicles are something you already have, they have something to do with pregnancy and getting pregnant, like the more you have the higher chance of pregnancy. But cyst are little water filled sacs that form in your uterus, they look like little bubbles, like when you get a blister.
In brief: Egg vs Fluid. A follicle is a normal part of the ovary that holds the egg. Each month a follicle is triggered by hormones to mature so that the egg can be ovulated. Cysts are fluid filled and larger than a normal follicle. There are many types of cysts.