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Best Answer: follicles are something you already have, they have something to do with pregnancy and getting pregnant, like the more you have the higher chance of pregnancy. But cyst are little water filled sacs that form in your uterus, they look like little bubbles, like when you get a blister.
Difference Between Cysts and Follicles? I just got back from a Follicle Scan...i'm on 50mg of clomid. My doc said that my ovaries had lots of cysts on them and that's prob why i'm having a hard time ovulating. Does Clomid cause cysts because i don't think they were there before...i was pregnant in may and he never said anything about... show more I just got back from a Follicle Scan...i'm on 50mg of clomid.