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Gastrointestinal Causes of Yellow Diarrhea. There are a few disorders of the stomach and bowel which can cause yellow diarrhea. It can be quite complicated to make a diagnosis as the symptoms can overlap, therefore if you develop yellow diarrhea and you have other symptoms you should see a doctor and have some tests done.
Chronic Diarrhea not caused by an infection may result from various causes such as: 1  Disorders of the pancreas (e.g. chronic pancreatitis, pancreatic enzyme deficiencies, cystic fibrosis). 2  Intestinal disorders (e.g. colitis, Crohnâs Disease, irritable bowel syndrome).