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Raspberries (and blackberries and all those similar) have a short shelf life which is why you rarely see them sold in stores. They might last a day or two but go bad fast (even with refrigeration.) Blueberries also go bad quickly but can last a bit longer. Yes, refrigerate them, but don't wait too long to eat.
How to Store Cupcakes. After the cupcakes have cooled, I keep then in large Tupperware-style containers. Food safety experts recommend that cupcakes with whipped cream, buttercream, cream cheese, or ganache frostings should be refrigerated.