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Making the world better, one answer at a time. I think both phosphorylases as well water molecules (hydrolysis) can break those P-O-P bonds in ATP.
The reaction performed by DNA ligase simply links the phosphate to a neighboring sugar, establishing the normal DNA backbone. It can repair a nick in the backbone (or even a series of nicks), as shown here, or a complete break between two separate DNA molecules, as shown below.