gets the data matrix . concode_field_sep GeneticProfile geneticProfile concode_elem_sep ArrayList<String> caseIdList concode_elem_sep ArrayList<String> geneList concode_elem_sep HashMap<String,String> mapFromGeneAndCaseToGeneProperties concode_elem_sep String[][] matrix concode_field_sep String getValue concode_elem_sep void processMatrix concode_elem_sep ArrayList<String> getCaseIdList concode_elem_sep ArrayList<String> getGeneList concode_elem_sep String createKey concode_elem_sep ValueParser getValueParsed concode_elem_sep GeneticProfile getGeneticProfile