sry ( sex determining region y)-box ( sox ) genes encode a group of transcription factors that bind to the minor groove of target dna elements and regulate transcriptional initiation of nearby promoters ( 1 ) . typically numbering in 20 in diverse vertebrate species
, the members of this family can be further divided into subgroups based on the level of amino acid conservation within the hmg box and the presence of other motifs ( 1 ) .
sox5 , sox6 , and sox13 comprise the soxd subgroup . aside from the highly conserved hmg box , they feature the leucine zipper motif which allows homo- and hetero - dimerization and consequently endows added flexibility in binding site selection ( 2 ) .
soxd genes are expressed widely during embryogenesis and play critical roles in various aspects of development including cell fate specification ( 2 ) . during development , sox5 is expressed in subsets of cells in the central nervous system ( cns ) , cranial ganglia , neural crest and skeletal / cartilage tissues as well as in melanocytes and th17 cells ( 26 ) . like sox 5 , sox6 is expressed in cns and skeletal / cartilage tissues but in addition is also seen in skeletal and cardiac myocytes and erythroid cells ( 2 , 7 ) sox13 also is seen in cells in developing cns and in cartilage progenitors ( 2 , 8) .
sox13 expression is detected in addition in the developing artery , inner ear , hair follicle and a subset of t cells ( 2 , 810 ) .
the best known functions of soxd genes have to do with cell fate determination and differentiation .
sox5 and sox6 are particularly well characterized for their redundant and synergistic roles in chondrogenic differentiation ( 1114 ) .
loss of either sox5 or sox6 has limited effects but that of both leads to severe chondrodysplasia leading to defects in skeleton formation and embryonic lethality ( 11 , 12 ) .
sox5 is also cell - autonomously required for normal th17 cell differentiation in mouse ( 6 ) .
independent of sox5 , sox6 functions in terminal differentiation of cardiac and skeletal muscle cells and erythroid cells ( 7 , 1517 ) .
sox13 is expressed in  t cells and promotes development of this subpopulation while opposing differentiation of  t cells ( 10 ) . consisting a minority subset of t cells ,  t cells express  and  receptors rather than  and  receptors and show distinct preferred tissues of localization and partly overlapping immune functions with   t cells ( 10 ) .
sox13-ablated mice show a severe growth retardation compared to wild type mice possibly due to the loss of wnt signaling modulation for which sox13 is responsible ( 10 ) .
the best characterized role of soxd genes in neural development has to do with the regulation of neuronal subtype determination .
most of the progress here also is in large part based on analyses of gene - targeted mice during embryogenesis .
sox5 is expressed in deep cortical layers ( layers v , vi , and subplate ) from which distinct neuronal populations are born in succession ( 18 ) .
the neurons in the deepest layer , the subplate are born in embryonic day ( e ) 11.5 while those in layers vi and v show the peaks of generation around e12.5 and e13.5 respectively ( 18 , 19 ) .
neurons in these deep cortical layers , mostly projecting subcortically to spinal cord , pons , midbrain , and thalamus , are born ahead of those in layers i through iv ( 18 ) .
their layer specification is marked and controlled by presence and/or absence of various transcription factors including cux1 , cux2 , ferzt2 , and ctip2 ( 18 ) .
lai and coworkers showed that deletion of sox5 results in an abnormal sequence in generation of layer specific neurons and dys - regulated gene expression leading to abrogation of layer specific characteristics ( 19 ) .
an independent study by kwan and coworkers in addition demonstrated that layer v subcerebral axons are missing and that sp and layer vi axons are misrouted ( 20 ) .
the results indicate that sox5 is critically involved in multiple aspects of neuronal differentiation for subsets of cortical neurons .
sox5 and sox6 show largely mutually exclusive expression patterns during corticogenesis ( 21 ) . in an elegant study by azim and coworkers ,
sox6 was shown to be expressed in the ventricular zone of pallium ( eventually the upper surface of cerebrum ) and postmitotic neurons of subpallium ( i.e. ganglionic eminence portions of telencephalon ) while sox5 expression was detected in subsets of postmitotic neurons in pallium and ventricular zone of subpallium ( 21 ) .
the complementary expression apparently reflects the mutually repressive function of the two transcription factors at least for the progenitor cells in the ventricular zone ( 21 ) .
specifically , loss of one gene leads to expansion of the zone expressing the other .
given however that ectopic expression of one transcription factor does not repress the expression of the other , it appears that sox5 and sox6 are necessary but not sufficient for the cross repression .
gene deletion of sox6 also revealed that sox6 controls diversity , positioning and maturation of subpallial postmitotic neurons which ultimately constitute cortical interneurons ( 21 , 22 ) .
panman and coworkers reported that sox6 is expressed in a medially located subset of mda neurons and its ablation leads to a decrease of substantia nigra pars compacta mda neurons and an increase in ventral tegmental area mda neurons ( 23 ) .
a critical counterpart player appears to be otx2 which is highly expressed in ventral tegmental area mda neurons and deletion of which leads to expansion of the midbrain region occupied by sox6-positive neurons ( 23 ) . far less is known about the function of sox13 although a brain - wide expression in the forebrain , midbrain , and hindbrain in post mitotic neurons has been reported ( 8) .
more recently , expression of sox13 has also been shown in oligodendrocyte lineage cells ( 24 ) .
this limited knowledge on sox13 function likely is due to the redundant role among soxd genes and a lack of distinct neural phenotypes in sox13-null mouse model .
therefore , although sox13 deletion on its own may result in subtle to no visible effect insofar as neuronal fate determination is concerned , combinatorial gene deletion will likely lead to better functional assignments .
a careful and detailed comparative analysis of expression pattern for the three genes should be carried out from which testable predictions on function can be made .
soxd transcription factors are not just expressed in postmitotic neurons but also in proliferating progenitors in the ventricular and subventricular zones ( vz and svz respectively ) of the developing nervous system ( 21 , 2527 ) .
alternatively , they may be involved in determining regional identity as their expression is seen in more restricted parts of the vz and svz compared to members of the soxb1 gene subfamily consisting of sox1 , sox2 , and sox3 ( 28 ) .
these transcription factors show broad and overlapping expression in the vz and svz of the developing nervous system ( 28 ) .
stemness of neural progenitors during embryogenesis and into adulthood ( 29 ) . in at least two different developmental contexts , soxd genes
using gene targeted models , stolt and coworkers showed that soxd proteins control multiple aspects of oligodendrocyte development ( 27 ) . specifically , they showed that deletion of either sox5 or sox6 induces premature appearance of cells positive for sox10 which is a definitive oligodendrocytic lineage marker in the central nervous system .
furthermore , terminal markers of oligodendrocytes such as proteolipid protein 1 and myelin basic protein were also precociously expressed .
importantly , they showed that the effect is more pronounced in compound knockout embryos demonstrating the redundant function of the two transcription factors .
recently , by examining sox6 and sox13 compound mutation embryo , the baroti and coworkers demonstrated that sox13 also contributes to inhibition of premature oligodendrocytic differentiation ( 24 ) .
it should be also noted that migration pattern as well showed anomaly in the gene - targeted embryos consistent with the proposed function of sox5 and sox6 in the multiple stages of oligodendrocyte development ( 27 ) . in another study by lee and coworkers , function of sox6 in a broader population of neural progenitors
the study was based on the finding that sox6 is a direct regulatory target of sox2 , a critical determinant of 
consistent with that sox6 was a downstream target of sox2 , sox6 expression was shown to occur among sox2 positive cells during neural development . using the chicken in ovo system which had been extensively used to examine spinal cord development
, the investigators first demonstrated that sox2 induces expression of sox6 in vivo and subsequently carried out gain- and loss - of - function of sox6 in the neural progenitors .
remarkably , inhibition of sox6 expression via rna interference led to a severe depletion of sox2 positive neural progenitors and induction of isl1 positive motor neurons in a spatiotemporally precocious manner .
taken together with that ectopic expression of sox6 resulted in enhanced sox2 expression and inhibition of motor neuron differentiation , it was proposed that sox6 forms a positive feedback network with sox2 and that together they maintain a pool of neural progenitor or stem cell population ( fig .
1 ) . sox5 shows an expression pattern partially overlapping with that of sox6 in the vz and svz of developing spinal cord ( 27 ) . like sox6
, sox5 has also been proposed to be a direct regulatory target of sox2 ( 25 ) .
it is thus possible that sox5 plays a similar role for the neural precursors in the developing spinal cord .
rather , a study by quiroga and coworkers described cell fate specifying function of sox5 in dorsal neural progenitors ultimately controlling the specification of dorsal interneurons ( 26 ) .
as described above , sox5 and sox6 are also expressed in the vz s of subpallium and pallium respectively ( 21 ) .
whether they are directly or indirectly targeted by sox2 or other soxb1 proteins in the cortex and whether they contribute to maintenance of 
it has been reported that sox5 inhibits premature differentiation of cortical neurons ( 19 ) .
this however is in reference to the proper sequence and timing in the generation of distinct types of cortical neurons and may have little to do with maintenance of 
stemness. azim and coworkers , who described the mutually exclusive pattern of expression of sox5 and sox6 also noted that a similar pattern is shown by ngn2 and mash1 expressed respectively in pallium and subpallium ( 21 ) .
in addition , other subpallium - restricted genes including olig2 , dlx1 , dlx2 , gxh2 , ils1 and meis1 all showed expression in pallium .
loss of sox5 however did not show a reciprocal expansion of the zone expressing pallium - specfic genes indicating that regulatory network is not built around sox5 and sox6 as the principal determinants of cell fate .
this view is further enhanced by the observation that sox6-deleted pallial progenitor cells co - express ngn2 and mash1 rather than losing ngn2 expression altogether .
still , it is clear that the two transcription factors contribute to demarcation of distinct zones of differentially fated cells .
it has been long noted that soxd transcription factors lack domains associated with transcriptional activation or repression ( 2 ) .
another issue is how they play apparently distinct roles during multiple developmental stages of given cell lineages .
for example , how do their roles switch from maintaining  stemness in neural progenitors to regulating timing of differentiation and cell type specific gene expression in developing cortical neurons and oligodendrocytes ? while little is known , interactions with other transcription factors and co - factors , both cooperative and inhibitory , are likely key parts of the answer ( 2 ) .
sox5 and sox6 bind to sites within  super - enhancers for the genes involved in chondrocyte development including transcription factors and extracellular matrix ( 14 ) .
importantly , they promote binding of sox9 to a distinct but often closely located sites thereby bringing the key activator of chondrogenesis to relevant target genes ( 13 , 14 ) .
stunningly , sox5 and sox6 inhibit the activity of the same sox9 as well as sox10 during oligodendrocyte development ( 27 ) .
the mechanisms thus may be cell type and target gene specific and include competing for binding sites and for other partner transcription factors such as olig2 ( 27 ) .
sox5 has also been reported to inhibit expression of sox10 target genes in the melanocyte lineage by recruiting the co - repressors ctbp2 and hdac1 to their regulatory regions ( 5 ) .
this is in contrast to physical interaction with bmp r - smads and activation of bmp target genes during early ectoderm patterning and neural crest formation ( 30 ) .
sox6 also has been reported to interact with hdac1 and can inhibit -catenin dependent transcriptional activation via direct interaction ( 31 ) . during cortical neuronal differentiation , sox5 has been shown to inhibit expression of fezf2 , a gene required for corticospinal neuron identity and connectivity , by competing with sox4 and sox11 for binding sites in an enhancer ( 32 ) .
finally , sox13 can block canonical wnt signaling by directly interacting with tcf1 and promote  t cell development ( 10 ) . in sum
, soxd genes can function as either activators or repressors of transcription depending on the developmental and cellular contexts and the nature of cis - regulatory elements of given target genes as well as the presence and interaction with other transcription factors or cofactors .
this represents overall a very complex situation that defies generalization , and direct target genes of soxd transcription factors need to be examined in a gene - by - gene manner .
the three soxd genes are expressed in diverse cell types throughout development in partially overlapping manners .
recent years have seen significant advances made in understanding of their roles in neural development . in particular ,
animal models including knockout mice have made major contributions to demonstrating their functions in maintaining 
stemness of progenitors , in generation of diverse subtypes of cortical neurons and in properly timed differentiation of oligodendrocytes .
still , our knowledge is extremely limited in terms of specific molecular mechanisms of transcriptional regulation .
this is in large part due to the diversity of molecular functions which soxd transcription factors are capable of performing and the lack of knowledge on direct regulatory target genes in most of the cell types expressing them .
this implies that what lies ahead is not a generalization but a gene - by - gene analyses .
specifically , we need to define transcriptional profiles regulated by these genes and determine direct target genes .
modern techniques and tools of molecular biology including rna - seq , chip - seq , and genomic sequences of multiple vertebrate species should enable the first necessary steps to this end .
 soxd transcription factor subfamily includes three members , sox5 , sox6 , and sox13 . like other sox genes 
 , they contain the high - mobility - group ( hmg ) box as the dna binding domain but in addition feature the subgroup - specific leucine zipper motif . 
 soxd genes are expressed in diverse cell types in multiple organs during embryogenesis and in adulthood . among the cells expressing them 
 are those present in the developing nervous system including neural stem ( or progenitor ) cells as well as differentiating neurons and oligodendrocytes . 
 soxd transcription factors do not contain distinct activator or repressor domain , and they are believed to function in modulation of other transcription factors in promoter - specific manners . this brief review article will attempt to summarize the latest studies on the function of soxd genes in embryogenesis with a particular emphasis on the regulation of neural development . 
Introduction to SoxD transcription factors
Role in cortical neuronal fate specification
Expression and function in neural progenitor cells
Molecular mechanisms of function
Conclusion